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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Streptomyces avermitilis"

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Search Summary

This query matches 66 Structures.

Refinements

Structure Determination Methodology

experimental (66)

Scientific Name of Source Organism

	Streptomyces avermitilis (33)
	Streptomyces avermitilis MA-4680 = NBRC 14893 (33)
	Homo sapiens (1)

Taxonomy

	Bacteria (66)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (65)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (66)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (28)
	2.0 - 2.5 (21)
	2.5 - 3.0 (7)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (23)
	2010 - 2014 (15)
	2015 - 2019 (9)
	2020 - 2024 (17)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (10)
	Oxidoreductases (8)
	Lyases (3)
	Transferases (2)
	Isomerases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (40)
	Cyclic (26)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	Artifacts (9)
	All alpha proteins (13)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 25 of 66 Structures

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1T47 \| pdb_00001t47	Download File View File

Structure of fe2-HPPD bound to NTBC

Brownlee, J., Johnson-Winters, K., Harrison, D.H.T., Moran, G.R.

(2004) Biochemistry 43: 6370-6377

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptomyces avermitilis
Macromolecule	4-hydroxyphenylpyruvate dioxygenase (protein)
Unique Ligands	FE2, NTD

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2IAB \| pdb_00002iab	Download File View File

Crystal structure of a protein with FMN-binding split barrel fold (NP_828636.1) from Streptomyces avermitilis at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2006-09-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces avermitilis
Macromolecule	Hypothetical protein (protein)
Unique Ligands	IPA

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2QNG \| pdb_00002qng	Download File View File

Crystal structure of unknown function protein SAV2460

Chang, C., Xu, X., Zheng, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptomyces avermitilis
Macromolecule	Uncharacterized protein SAV2460 (protein)
Unique Ligands	CA

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2RDN \| pdb_00002rdn	Download File View File

Crystal Structure of PtlH with AKG and ent-1PL bound

You, Z., Omura, S., Ikeda, H., Cane, D.E., Jogl, G.

(2007) J Biological Chem 282: 36552-36560

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Streptomyces avermitilis
Macromolecule	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase (protein)
Unique Ligands	1PL, AKG, FE, MG

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2RDQ \| pdb_00002rdq	Download File View File

Crystal Structure of PtlH with Fe/alpha ketoglutarate bound

You, Z., Omura, S., Ikeda, H., Cane, D.E., Jogl, G.

(2007) J Biological Chem 282: 36552-36560

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Streptomyces avermitilis
Macromolecule	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase (protein)
Unique Ligands	AKG, FE, MG

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2RDR \| pdb_00002rdr	Download File View File

Crystal Structure of PtlH with Fe/oxalylglycine bound

You, Z., Omura, S., Ikeda, H., Cane, D.E., Jogl, G.

(2007) J Biological Chem 282: 36552-36560

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avermitilis
Macromolecule	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase (protein)
Unique Ligands	FE, MG, OGA

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2RDS \| pdb_00002rds	Download File View File

Crystal Structure of PtlH with Fe/oxalylglycine and ent-1-deoxypentalenic acid bound

You, Z., Omura, S., Ikeda, H., Cane, D.E., Jogl, G.

(2007) J Biological Chem 282: 36552-36560

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptomyces avermitilis
Macromolecule	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase (protein)
Unique Ligands	1PL, FE, MG, OGA

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3A21 \| pdb_00003a21	Download File View File

Crystal Structure of Streptomyces avermitilis beta-L-Arabinopyranosidase

Fujimoto, Z., Ichinose, H., Kaneko, S.

(2009) J Biological Chem 284: 25097-25106

Released	2009-07-14
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Streptomyces avermitilis
Macromolecule	Putative secreted alpha-galactosidase (protein)
Unique Ligands	1PG, EPE, GOL, SO4

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3A22 \| pdb_00003a22	Download File View File

Crystal Structure of beta-L-Arabinopyranosidase complexed with L-arabinose

Fujimoto, Z., Ichinose, H., Kaneko, S.

(2009) J Biological Chem 284: 25097-25106

Released	2009-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces avermitilis
Macromolecule	Putative secreted alpha-galactosidase (protein)
Unique Ligands	1PG, ARA, EPE, GOL, SO4

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3A23 \| pdb_00003a23	Download File View File

Crystal Structure of beta-L-Arabinopyranosidase complexed with D-galactose

Fujimoto, Z., Ichinose, H., Kaneko, S.

(2009) J Biological Chem 284: 25097-25106

Released	2009-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces avermitilis
Macromolecule	Putative secreted alpha-galactosidase (protein)
Unique Ligands	1PG, EPE, GAL, GOL, SO4

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3ABA \| pdb_00003aba	Download File View File

Crystal structure of CYP105P1 in complex with filipin I

Xu, L.H., Fushinobu, S., Takamatsu, S., Wakagi, T., Ikeda, H., Shoun, H.

(2010) J Biological Chem 285: 16844-16853

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avermitilis
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	FLI, HEM, SO4

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3ABB \| pdb_00003abb	Download File View File

Crystal structure of CYP105D6

Xu, L.H., Fushinobu, S., Takamatsu, S., Wakagi, T., Ikeda, H., Shoun, H.

(2010) J Biological Chem 285: 16844-16853

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptomyces avermitilis
Macromolecule	Cytochrome P450 hydroxylase (protein)
Unique Ligands	HEM

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3AKF \| pdb_00003akf	Download File View File

Crystal structure of exo-1,5-alpha-L-arabinofuranosidase

Fujimoto, Z., Ichinose, H., Kaneko, S.

(2010) J Biological Chem 285: 34134-34143

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces avermitilis MA-4680 = NBRC 14893
Macromolecule	Putative secreted alpha L-arabinofuranosidase II (protein)
Unique Ligands	CL, GOL, NA

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3AKG \| pdb_00003akg	Download File View File

Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-1,5-L-arabinofuranobiose

Fujimoto, Z., Ichinose, H., Kaneko, S.

(2010) J Biological Chem 285: 34134-34143

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avermitilis MA-4680 = NBRC 14893
Macromolecule	Putative secreted alpha L-arabinofuranosidase II (protein)
Unique Ligands	AHR, CL, GOL, NA
Unique branched monosaccharides	AHR

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3AKH \| pdb_00003akh	Download File View File

Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-1,5-L-arabinofuranotriose

Fujimoto, Z., Ichinose, H., Kaneko, S.

(2010) J Biological Chem 285: 34134-34143

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avermitilis MA-4680 = NBRC 14893
Macromolecule	Putative secreted alpha L-arabinofuranosidase II (protein)
Unique Ligands	AHR, CL, GOL, NA
Unique branched monosaccharides	AHR

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3AKI \| pdb_00003aki	Download File View File

Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-L-arabinofuranosyl azido

Fujimoto, Z., Ichinose, H., Kaneko, S.

(2010) J Biological Chem 285: 34134-34143

Released	2010-08-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces avermitilis MA-4680 = NBRC 14893
Macromolecule	Putative secreted alpha L-arabinofuranosidase II (protein)
Unique Ligands	AH8, CL, GOL, NA

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3CNX \| pdb_00003cnx	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE DEHYDRATASE FROM THE NTF2-LIKE FAMILY (SAV_4671) FROM STREPTOMYCES AVERMITILIS AT 2.10 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces avermitilis
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CL, GOL, MG, PEG, PG6, PGE, UNL

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3DEX \| pdb_00003dex	Download File View File

Crystal structure of SAV_2001 protein from Streptomyces avermitilis, Northeast Structural Genomics Consortium Target SvR107.

Forouhar, F., Neely, H., Seetharaman, J., Janjua, H., Fang, Y., Xiao, R., Cunningham, K., Ma, L.-C., Owen, L.A., Chen, C.X., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces avermitilis
Macromolecule	SAV_2001 (protein)

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3E5J \| pdb_00003e5j	Download File View File

Crystal structure of CYP105P1 wild-type ligand-free form

Xu, L.H., Fushinobu, S., Ikeda, H., Wakagi, T., Shoun, H.

(2009) J Bacteriol 191: 1211-1219

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces avermitilis
Macromolecule	Cytochrome P450 (Cytochrome P450 hydroxylase) (protein)
Unique Ligands	HEM

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3E5K \| pdb_00003e5k	Download File View File

Crystal structure of CYP105P1 wild-type 4-phenylimidazole complex

Xu, L.H., Fushinobu, S., Ikeda, H., Wakagi, T., Shoun, H.

(2009) J Bacteriol 191: 1211-1219

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptomyces avermitilis
Macromolecule	Cytochrome P450 (Cytochrome P450 hydroxylase) (protein)
Unique Ligands	HEM, PIM

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3E5L \| pdb_00003e5l	Download File View File

Crystal structure of CYP105P1 H72A mutant

Xu, L.H., Fushinobu, S., Ikeda, H., Wakagi, T., Shoun, H.

(2009) J Bacteriol 191: 1211-1219

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces avermitilis
Macromolecule	Cytochrome P450 (Cytochrome P450 hydroxylase) (protein)
Unique Ligands	HEM

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3EET \| pdb_00003eet	Download File View File

Crystal structure of putative GntR-family transcriptional regulator

Chang, C., Xu, X., Zheng, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-09-16
Method	X-RAY DIFFRACTION 1.969 Å
Organisms	Streptomyces avermitilis
Macromolecule	Putative GntR-family transcriptional regulator (protein)

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3GIW \| pdb_00003giw	Download File View File

CRYSTAL STRUCTURE OF a DUF574 family protein (SAV_2177) FROM STREPTOMYCES AVERMITILIS MA-4680 AT 1.45 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2009-04-14
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Streptomyces avermitilis MA-4680 = NBRC 14893
Macromolecule	Protein of unknown function DUF574 (protein)
Unique Ligands	GOL, UNL

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3GKB \| pdb_00003gkb	Download File View File

Crystal structure of a putative enoyl-CoA hydratase from Streptomyces avermitilis

Bonanno, J.B., Freeman, J., Bain, K.T., Chang, S., Romero, R., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avermitilis
Macromolecule	Putative enoyl-CoA hydratase (protein)
Unique Ligands	GOL

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3GO4 \| pdb_00003go4	Download File View File

Crystal structure of a duf574 family protein (sav_2177) from streptomyces avermitilis ma-4680 at 1.80 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2009-04-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avermitilis MA-4680 = NBRC 14893
Macromolecule	Protein of unknown function DUF574 (protein)
Unique Ligands	EDO, SAH, SO4

1 to 25 of 66 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1T47 | pdb_00001t47

2IAB | pdb_00002iab

2QNG | pdb_00002qng

2RDN | pdb_00002rdn

2RDQ | pdb_00002rdq

2RDR | pdb_00002rdr

2RDS | pdb_00002rds

3A21 | pdb_00003a21

3A22 | pdb_00003a22

3A23 | pdb_00003a23

3ABA | pdb_00003aba

3ABB | pdb_00003abb

3AKF | pdb_00003akf

3AKG | pdb_00003akg

3AKH | pdb_00003akh

3AKI | pdb_00003aki

3CNX | pdb_00003cnx

3DEX | pdb_00003dex

3E5J | pdb_00003e5j

3E5K | pdb_00003e5k

3E5L | pdb_00003e5l

3EET | pdb_00003eet

3GIW | pdb_00003giw

3GKB | pdb_00003gkb

3GO4 | pdb_00003go4