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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Thermus thermophilus"

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Search Summary

This query matches 2,277 Structures.

Refinements

Structure Determination Methodology

experimental (2,277)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (1,401)
	Thermus thermophilus (680)
	Thermus thermophilus HB27 (265)
	Escherichia coli (189)
	synthetic construct (125)
	Escherichia coli K-12 (113)
	Tequatrovirus T4 (56)
	Escherichia coli str. K-12 substr. MDS42 (17)
	Homo sapiens (12)
	Bacillus subtilis (9)

More...

Taxonomy

	Bacteria (2,277)
	other sequences (125)
	Duplodnaviria (64)
	Eukaryota (51)
	Archaea (3)
	unclassified sequences (2)
	Riboviria (1)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (2,067)
	ELECTRON MICROSCOPY (150)
	SOLUTION NMR (60)
	NEUTRON DIFFRACTION (4)
	EPR (2)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (2,255)
	RNA (590)
	DNA (107)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (83)
	1.5 - 2.0 (606)
	2.0 - 2.5 (519)
	2.5 - 3.0 (416)
	3.0 - 3.5 (329)
	3.5 - 4.0 (144)
	4.0 - 4.5 (38)
	> 4.5 (75)

Release Date

	1990 - 1994 (12)
	1995 - 1999 (44)
	2000 - 2004 (297)
	2005 - 2009 (622)
	2010 - 2014 (485)
	2015 - 2019 (440)
	2020 - 2024 (370)
	2025 - 2029 (7)

Enzyme Classification Name

	Transferases (347)
	Oxidoreductases (281)
	Translocases (119)
	Hydrolases (273)
	Ligases (137)
	Lyases (75)
	Isomerases (64)

Membrane Protein Annotation

	PDBTM (114)
	MemProtMD (91)
	OPM (50)
	mpstruc (58)

Symmetry Type

	Asymmetric (1,400)
	Cyclic (726)
	Dihedral (229)
	Tetrahedral (14)
	Helical (11)

SCOP Classification

	Alpha and beta proteins (a/b) (595)
	Alpha and beta proteins (a+b) (357)
	All alpha proteins (187)
	All beta proteins (186)
	Low resolution protein structures (21)
	Multi-domain proteins (alpha and beta) (53)
	Artifacts (82)
	Membrane and cell surface proteins and peptides (39)
	Small proteins (33)
	Peptides (29)

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AllSelected

1 to 25 of 2,277 Structures

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1A8H \| pdb_00001a8h	Download File View File

METHIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Sugiura, I., Nureki, O., Ugaji, Y., Kuwabara, S., Lober, B., Giege, R., Moras, D., Yokoyama, S., Konno, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) Structure 8: 197-208

Released	1999-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	METHIONYL-TRNA SYNTHETASE (protein)
Unique Ligands	ZN

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1AB3 \| pdb_00001ab3	Download File View File

RIBOSOMAL PROTEIN S15 FROM THERMUS THERMOPHILUS, NMR, 26 STRUCTURES

Berglund, H., Rak, A., Serganov, A., Garber, M., Hard, T.

(1997) Nat Struct Biol 4: 20-23

Released	1997-04-01
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	RIBOSOMAL RNA BINDING PROTEIN S15 (protein)

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1AD2 \| pdb_00001ad2	Download File View File

RIBOSOMAL PROTEIN L1 MUTANT WITH SERINE 179 REPLACED BY CYSTEINE

Unge, J., Al-Karadaghi, S., Liljas, A., Jonsson, B.-H., Eliseikina, I., Ossina, N., Nevskaya, N., Fomenkova, N., Garber, M., Nikonov, S.

(1997) FEBS Lett 411: 53-59

Released	1997-05-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	RIBOSOMAL PROTEIN L1 (protein)
Unique Ligands	HG, MRD, SO4

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1ADJ \| pdb_00001adj	Download File View File

HISTIDYL-TRNA SYNTHETASE IN COMPLEX WITH HISTIDINE

Cusack, S., Aberg, A.

(1997) Biochemistry 36: 3084-3094

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermus thermophilus
Macromolecule	HISTIDYL-TRNA SYNTHETASE (protein)
Unique Ligands	HIS, SO4

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1ADY \| pdb_00001ady	Download File View File

HISTIDYL-TRNA SYNTHETASE IN COMPLEX WITH HISTIDYL-ADENYLATE

Cusack, S., Aberg, A.

(1997) Biochemistry 36: 3084-3094

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus
Macromolecule	HISTIDYL-TRNA SYNTHETASE (protein)
Unique Ligands	HAM, SO4

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1AIP \| pdb_00001aip	Download File View File

EF-TU EF-TS COMPLEX FROM THERMUS THERMOPHILUS

Wang, Y., Jiang, Y., Meyering-Voss, M., Sprinzl, M., Sigler, P.B.

(1997) Nat Struct Biol 4: 650-656

Released	1997-10-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	ELONGATION FACTOR TS (protein) ELONGATION FACTOR TU (protein)

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1AN7 \| pdb_00001an7	Download File View File

RIBOSOMAL PROTEIN S8 FROM THERMUS THERMOPHILUS

Nevskaya, N., Nikonov, S., Al-Karadaghi, S.

(1998) J Mol Biology 279: 233-244

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermus thermophilus
Macromolecule	RIBOSOMAL PROTEIN S8 (protein)

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1ATI \| pdb_00001ati	Download File View File

CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Logan, D.T., Mazauric, M.-H., Kern, D., Moras, D.

(1995) EMBO J 14: 4156-4167

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Thermus thermophilus HB8
Macromolecule	GLYCYL-TRNA SYNTHETASE (protein) GLYCYL-tRNA SYNTHETASE (protein)

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1B5O \| pdb_00001b5o	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE SINGLE MUTANT 1

Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2003-09-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	PROTEIN (ASPARTATE AMINOTRANSFERASE) (protein)
Unique Ligands	PLP, PO4

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1B5P \| pdb_00001b5p	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1

Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	PROTEIN (ASPARTATE AMINOTRANSFERASE) (protein)
Unique Ligands	PLP, PO4

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1B70 \| pdb_00001b70	Download File View File

PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINE

Reshetnikova, L., Moor, N., Lavrik, O., Vassylyev, D.G.

(1999) J Mol Biology 287: 555-568

Released	2000-02-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermus thermophilus
Macromolecule	PHENYLALANYL-TRNA SYNTHETASE (protein)
Unique Ligands	MG, PHE

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1B76 \| pdb_00001b76	Download File View File

GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH ATP

Arnez, J.G., Moras, D.

(1999) J Mol Biology 286: 1449-1459

Released	1999-01-28
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Glycine--tRNA ligase (protein)
Unique Ligands	ATP

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1B7Y \| pdb_00001b7y	Download File View File

PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINYL-ADENYLATE

Reshetnikova, L., Moor, N., Lavrik, O., Vassylyev, D.G.

(1999) J Mol Biology 287: 555-568

Released	2000-01-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus
Macromolecule	PROTEIN (PHENYLALANYL-TRNA SYNTHETASE) (protein)
Unique Ligands	FYA, MG

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1BDM \| pdb_00001bdm	Download File View File

THE STRUCTURE AT 1.8 ANGSTROMS RESOLUTION OF A SINGLE SITE MUTANT (T189I) OF MALATE DEHYDROGENASE FROM THERMUS FLAVUS WITH INCREASED ENZYMATIC ACTIVITY

Kelly, C.A., Birktoft, J.J.

(1993) Biochemistry 32: 3913-3922

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	NAX

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1BJW \| pdb_00001bjw	Download File View File

ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS

Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) Biochemistry 38: 2413-2424

Released	1999-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PO4

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1BKG \| pdb_00001bkg	Download File View File

ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS WITH MALEATE

Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) Biochemistry 38: 2413-2424

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	MAE, PMP

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1BMD \| pdb_00001bmd	Download File View File

DETERMINANTS OF PROTEIN THERMOSTABILITY OBSERVED IN THE 1.9 ANGSTROMS CRYSTAL STRUCTURE OF MALATE DEHYDROGENASE FROM THE THERMOPHILIC BACTERIUM THERMUS FLAVUS

Kelly, C.A., Birktoft, J.J.

(1993) Biochemistry 32: 3913-3922

Released	1994-07-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	NAD

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1BXB \| pdb_00001bxb	Download File View File

XYLOSE ISOMERASE FROM THERMUS THERMOPHILUS

Chang, C., Park, B.C., Lee, D.-S., Suh, S.W.

(1999) J Mol Biology 288: 623-634

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	XYLOSE ISOMERASE (protein)

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1BXE \| pdb_00001bxe	Download File View File

RIBOSOMAL PROTEIN L22 FROM THERMUS THERMOPHILUS

Unge, J., Aberg, A., Al-Karadaghi, S., Nikulin, A., Nikonov, S., Davydova, N., Nevskaya, N., Garber, M., Liljas, A.

(1998) Structure 6: 1577-1586

Released	1998-10-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	PROTEIN (RIBOSOMAL PROTEIN L22) (protein)
Unique Ligands	CL

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1BXY \| pdb_00001bxy	Download File View File

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L30 FROM THERMUS THERMOPHILUS AT 1.9 A RESOLUTION: CONFORMATIONAL FLEXIBILITY OF THE MOLECULE.

Fedorov, R., Nevskaya, N., Khairullina, A., Tishchenko, S., Mikhailov, A., Garber, M., Nikonov, S.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1827-1833

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	PROTEIN (RIBOSOMAL PROTEIN L30) (protein)

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1C4O \| pdb_00001c4o	Download File View File

CRYSTAL STRUCTURE OF THE DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB FROM THERMUS THERMOPHILUS

Machius, M., Henry, L., Palnitkar, M., Deisenhofer, J.

(1999) Proc Natl Acad Sci U S A 96: 11717-11722

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB (protein)
Unique Ligands	BOG, SO4

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1C52 \| pdb_00001c52	Download File View File

THERMUS THERMOPHILUS CYTOCHROME-C552: A NEW HIGHLY THERMOSTABLE CYTOCHROME-C STRUCTURE OBTAINED BY MAD PHASING

Than, M.E., Hof, P., Huber, R., Bourenkov, G.P., Bartunik, H.D., Buse, G., Soulimane, T.

(1997) J Mol Biology 271: 629-644

Released	1998-06-24
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Thermus thermophilus
Macromolecule	CYTOCHROME-C552 (protein)
Unique Ligands	HEM

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1CQM \| pdb_00001cqm	Download File View File

PROTEIN AGGREGATION AND ALZHEIMER'S DISEASE: CRYSTALLOGRAPHIC ANALYSIS OF THE PHENOMENON. ENGINEERED VERSION OF THE RIBOSOMAL PROTEIN S6 USED AS A STABLE SCAFFOLD TO STUDY OLIGOMERIZATION.

Kristensen, O., Otzen, D.E., Oliveberg, M.

(2000) Proc Natl Acad Sci U S A 97: 9907-9912

Released	2000-09-08
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus
Macromolecule	RIBOSOMAL PROTEIN S6 (protein)

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1CQN \| pdb_00001cqn	Download File View File

PROTEIN AGGREGATION AND ALZHEIMER'S DISEASE: CRYSTALLOGRAPHIC ANALYSIS OF THE PHENOMENON. ENGINEERED VERSION OF THE RIBOSOMAL PROTEIN S6 USED AS A STABLE SCAFFOLD TO STUDY OLIGOMERIZATION.

Kristensen, O., Otzen, D.E., Oliveberg, M.

(2000) Proc Natl Acad Sci U S A 97: 9907-9912

Released	2000-09-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus
Macromolecule	RIBOSOMAL PROTEIN S6 (protein)

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1D2M \| pdb_00001d2m	Download File View File

UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME

Nakagawa, N., Sugahara, M., Masui, R., Kato, R., Fukuyama, K., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) J Biochem 126: 986-990

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	EXCINUCLEASE ABC SUBUNIT B (protein)
Unique Ligands	BOG, SO4

1 to 25 of 2,277 Structures

Page 1 of 92

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A8H | pdb_00001a8h

1AB3 | pdb_00001ab3

1AD2 | pdb_00001ad2

1ADJ | pdb_00001adj

1ADY | pdb_00001ady

1AIP | pdb_00001aip

1AN7 | pdb_00001an7

1ATI | pdb_00001ati

1B5O | pdb_00001b5o

1B5P | pdb_00001b5p

1B70 | pdb_00001b70

1B76 | pdb_00001b76

1B7Y | pdb_00001b7y

1BDM | pdb_00001bdm

1BJW | pdb_00001bjw

1BKG | pdb_00001bkg

1BMD | pdb_00001bmd

1BXB | pdb_00001bxb

1BXE | pdb_00001bxe

1BXY | pdb_00001bxy

1C4O | pdb_00001c4o

1C52 | pdb_00001c52

1CQM | pdb_00001cqm

1CQN | pdb_00001cqn

1D2M | pdb_00001d2m