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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Vibrio harveyi"

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Search Summary

This query matches 84 Structures.

Refinements

Structure Determination Methodology

experimental (84)

Scientific Name of Source Organism

	Vibrio harveyi (69)
	Vibrio harveyi 1DA3 (12)
	Escherichia coli (2)
	Vibrio harveyi VHJR7 (2)
	Vibrio harveyi CAIM 1792 (1)

Taxonomy

Bacteria (84)

Experimental Method

	X-RAY DIFFRACTION (70)
	ELECTRON MICROSCOPY (12)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (84)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (31)
	2.0 - 2.5 (23)
	2.5 - 3.0 (22)
	3.0 - 3.5 (3)

Release Date

	1995 - 1999 (7)
	2000 - 2004 (4)
	2005 - 2009 (8)
	2010 - 2014 (20)
	2015 - 2019 (13)
	2020 - 2024 (31)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (29)
	Oxidoreductases (11)
	Transferases (4)

Membrane Protein Annotation

	PDBTM (13)
	MemProtMD (8)
	OPM (5)
	mpstruc (5)

Symmetry Type

	Asymmetric (51)
	Cyclic (19)
	Dihedral (16)

SCOP Classification

	Alpha and beta proteins (a/b) (23)
	Alpha and beta proteins (a+b) (8)
	Artifacts (7)
	All alpha proteins (2)

AllSelected

1 to 25 of 84 Structures

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1BKJ \| pdb_00001bkj	Download File View File

NADPH:FMN OXIDOREDUCTASE FROM VIBRIO HARVEYI

Tanner, J.J., Lei, B., TU, S.-C., Krause, K.L.

(1996) Biochemistry 35: 13531-13539

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vibrio harveyi
Macromolecule	NADPH-FLAVIN OXIDOREDUCTASE (protein)
Unique Ligands	FMN, PO4

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1BRL \| pdb_00001brl	Download File View File

THREE-DIMENSIONAL STRUCTURE OF BACTERIAL LUCIFERASE FROM VIBRIO HARVEYI AT 2.4 ANGSTROMS RESOLUTION

Fisher, A.J., Rayment, I.

(1995) Biochemistry 34: 6581-6586

Released	1996-04-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vibrio harveyi
Macromolecule	BACTERIAL LUCIFERASE (protein)
Unique Ligands	PO4

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1BSL \| pdb_00001bsl	Download File View File

STRUCTURE OF ALKANAL MONOOXYGENASE BETA CHAIN

Rayment, I., Holden, H.M., Thoden, J.B., Baldwin, T.O.

(1997) Protein Sci 6: 13-23

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Vibrio harveyi
Macromolecule	BACTERIAL LUCIFERASE (protein)

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1EYY \| pdb_00001eyy	Download File View File

CRYSTAL STRUCTURE OF THE NADP+ DEPENDENT ALDEHYDE DEHYDROGENASE FROM VIBRIO HARVEYI.

Ahvazi, B., Coulombe, R., Delarge, M., Vedadi, M., Zhang, L., Meighen, E., Vrielink, A.

(2000) Biochem J 349: 853-861

Released	2000-05-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio harveyi
Macromolecule	ALDEHYDE DEHYDROGENASE (protein)
Unique Ligands	NAP

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1EZ0 \| pdb_00001ez0	Download File View File

CRYSTAL STRUCTURE OF THE NADP+ DEPENDENT ALDEHYDE DEHYDROGENASE FROM VIBRIO HARVEYI.

Ahvazi, B., Coulombe, R., Delarge, M., Vedadi, M., Zhang, L., Meighen, E., Vrielink, A.

(2000) Biochem J 349: 853-861

Released	2000-05-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio harveyi
Macromolecule	ALDEHYDE DEHYDROGENASE (protein)
Unique Ligands	NAP

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1JX6 \| pdb_00001jx6	Download File View File

CRYSTAL STRUCTURE OF LUXP FROM VIBRIO HARVEYI COMPLEXED WITH AUTOINDUCER-2

Chen, X., Schauder, S., Potier, N., Van Dorsselaer, A., Pelczer, I., BassleR, B.L., Hughson, F.M.

(2002) Nature 415: 545-549

Released	2002-02-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Vibrio harveyi
Macromolecule	LUXP PROTEIN (protein)
Unique Ligands	AI2, CA

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1LUC \| pdb_00001luc	Download File View File

BACTERIAL LUCIFERASE

Fisher, A.J., Rayment, I.

(1996) J Biological Chem 271: 21956-21968

Released	1996-12-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Vibrio harveyi
Macromolecule	BACTERIAL LUCIFERASE (protein)
Unique Ligands	EDO, MG

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1THT \| pdb_00001tht	Download File View File

STRUCTURE OF A MYRISTOYL-ACP-SPECIFIC THIOESTERASE FROM VIBRIO HARVEYI

Lawson, D.M., Derewenda, U., Serre, L., Ferri, S., Szitter, R., Wei, Y., Meighen, E.A., Derewenda, Z.S.

(1994) Biochemistry 33: 9382-9388

Released	1995-06-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio harveyi
Macromolecule	THIOESTERASE (protein)

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1XKJ \| pdb_00001xkj	Download File View File

BACTERIAL LUCIFERASE BETA2 HOMODIMER

Tanner, J.J., Krause, K.L.

(1997) Biochemistry 36: 665-672

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio harveyi
Macromolecule	BETA2 LUCIFERASE (protein)

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1Y6D \| pdb_00001y6d	Download File View File

Solution structure and dynamics of LuxU from Vibrio harveyi, a phosphotransferase protein involved in bacterial quorum sensing

Ulrich, D.L., Kojetin, D., Bassler, B.L., Cavanagh, J., Loria, J.P.

(2005) J Mol Biology 347: 297-307

Released	2004-12-14
Method	SOLUTION NMR
Organisms	Vibrio harveyi
Macromolecule	Phosphorelay protein luxU (protein)

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1ZHH \| pdb_00001zhh	Download File View File

Crystal Structure of the Apo Form of Vibrio Harveyi LUXP Complexed with the Periplasmic Domain of LUXQ

Neiditch, M.B., Federle, M.J., Miller, S.T., Bassler, B.L., Hughson, F.M.

(2005) Mol Cell 18: 507-518

Released	2005-05-24
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Vibrio harveyi
Macromolecule	Autoinducer 2 sensor kinase/phosphatase luxQ (protein) Autoinducer 2-binding periplasmic protein luxP (protein)
Unique Ligands	NHE

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2BKJ \| pdb_00002bkj	Download File View File

NADPH:FMN OXIDOREDUCTASE FROM VIBRIO HARVEYI COMPLEXED WITH NAD+

Tanner, J.J., TU, S.-C., Krause, K.L.

(1999) Protein Sci 8: 1725-1732

Released	1999-09-10
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Vibrio harveyi
Macromolecule	FLAVIN REDUCTASE (protein)
Unique Ligands	FMN, NAD

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2HJ9 \| pdb_00002hj9	Download File View File

Crystal structure of the Autoinducer-2-bound form of Vibrio harveyi LuxP complexed with the periplasmic domain of LuxQ

Neiditch, M.B., Hughson, F.M.

(2006) Cell 126: 1095-1108

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Vibrio harveyi
Macromolecule	Autoinducer 2 sensor kinase/phosphatase luxQ (protein) Autoinducer 2-binding periplasmic protein luxP (protein)
Unique Ligands	AI2

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2HJE \| pdb_00002hje	Download File View File

Crystal structure of Vibrio harveyi LuxQ periplasmic domain

Neiditch, M.B., Kelly, R.C., Hughson, F.M.

(2006) Cell 126: 1095-1108

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio harveyi
Macromolecule	Autoinducer 2 sensor kinase/phosphatase luxQ (protein)
Unique Ligands	NI

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2L0Q \| pdb_00002l0q	Download File View File

NMR Solution Structure of Vibrio harveyi Acyl Carrier Protein (ACP)

Chan, D.I., Chu, B.C.H., Lau, C.K.Y., Hunter, H.N., Byers, D.M., Vogel, H.J.

(2010) J Biological Chem 285: 30558-30566

Released	2010-07-21
Method	SOLUTION NMR
Organisms	Vibrio harveyi 1DA3
Macromolecule	Acyl carrier protein (protein)

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3ARO \| pdb_00003aro	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - apo structure

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	GOL

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3ARP \| pdb_00003arp	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - complex structure with DEQUALINIUM

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	DEQ, GOL

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3ARQ \| pdb_00003arq	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - complex structure with IDARUBICIN

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	DM5, GOL

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3ARR \| pdb_00003arr	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - complex structure with PENTOXIFYLLINE

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	PNX

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3ARS \| pdb_00003ars	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - apo structure of mutant W275G

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)

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3ART \| pdb_00003art	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - W275G mutant complex structure with DEQUALINIUM

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	DEQ, GOL

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3ARU \| pdb_00003aru	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - W275G mutant complex structure with PENTOXIFYLLINE

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	PNX

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3ARV \| pdb_00003arv	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - complex structure with Sanguinarine

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	GOL, SAU

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3ARW \| pdb_00003arw	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - complex structure with chelerythrine

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	CTI, GOL

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3ARX \| pdb_00003arx	Download File View File

Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - complex structure with Propentofylline

Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.

(2011) J Biological Chem 286: 24312-24323

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.16 Å
Organisms	Vibrio harveyi
Macromolecule	Chitinase A (protein)
Unique Ligands	GOL, POY

1 to 25 of 84 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BKJ | pdb_00001bkj

1BRL | pdb_00001brl

1BSL | pdb_00001bsl

1EYY | pdb_00001eyy

1EZ0 | pdb_00001ez0

1JX6 | pdb_00001jx6

1LUC | pdb_00001luc

1THT | pdb_00001tht

1XKJ | pdb_00001xkj

1Y6D | pdb_00001y6d

1ZHH | pdb_00001zhh

2BKJ | pdb_00002bkj

2HJ9 | pdb_00002hj9

2HJE | pdb_00002hje

2L0Q | pdb_00002l0q

3ARO | pdb_00003aro

3ARP | pdb_00003arp

3ARQ | pdb_00003arq

3ARR | pdb_00003arr

3ARS | pdb_00003ars

3ART | pdb_00003art

3ARU | pdb_00003aru

3ARV | pdb_00003arv

3ARW | pdb_00003arw

3ARX | pdb_00003arx