RCSB PDB: Search

1TJ6	Download File View File

Crystal structure of the Xenopus tropicalis Spred1 EVH-1 domain

Harmer, N.J., Sivak, J., Amaya, E., Blundell, T.L.

To be published

Released	2005-08-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Xenopus tropicalis
Macromolecule	Spred1 (protein)

1XOD	Download File View File

Crystal structure of X. tropicalis Spred1 EVH-1 domain

Harmer, N.J., Sivak, J.M., Amaya, E., Blundell, T.L.

(2005) FEBS Lett 579: 1161-1166

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Xenopus tropicalis
Macromolecule	Spred1 (protein)
Unique Ligands	GOL

2UYW	Download File View File

Crystal structure of Xenavidin

Helppolainen, S.H., Maatta, J.A.E., Airenne, T.T., Johnson, M.S., Kulomaa, M.S., Nordlund, H.R.

(2009) BMC Struct Biol 9: 63

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xenopus tropicalis
Macromolecule	XENAVIDIN (protein)
Unique Ligands	BTN, FMT

2UZ2	Download File View File

Crystal structure of Xenavidin

Helppolainen, S.H., Maatta, J.A.E., Airenne, T.T., Johnson, M.S., Kulomaa, M.S., Nordlund, H.R.

(2009) BMC Struct Biol 9: 63

Released	2008-06-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xenopus tropicalis
Macromolecule	XENAVIDIN (protein)
Unique Ligands	ACT, BTN

3AFR	Download File View File

Crystal Structure of VDR-LBD/22S-Butyl-1a,24R-dihydroxyvitamin D3 complex

Inaba, Y., Nakabayashi, M., Itoh, T., Ikura, T., Ito, N., Yamamoto, K.

(2010) J Steroid Biochem Mol Biol 121: 146-150

Released	2010-03-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus Xenopus tropicalis
Macromolecule	13-meric peptide from Mediator of RNA polymerase II transcription subunit 1 (protein) Vitamin D3 receptor (protein)
Unique Ligands	ICJ

3C1B	Download File View File

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

Lu, X., Simon, M., Chodaparambil, J., Hansen, J., Shokat, K., Luger, K.

(2008) Nat Struct Mol Biol 15: 1122-1124

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xenopus laevis Xenopus tropicalis
Macromolecule	Histone 2, H2bf (protein) Histone H2A type 1 (protein) Histone H3-like (protein) Histone H4 (protein) Palindromic 146bp Human Alpha satellite DNA (nucleic acid)

3C1C	Download File View File

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

Lu, X., Simon, M., Chodaparambil, J., Hansen, J., Shokat, K., Luger, K.

(2008) Nat Struct Mol Biol 15: 1122-1124

Released	2008-10-07
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Xenopus laevis Xenopus tropicalis
Macromolecule	Histone 2, H2bf (protein) Histone H2A type 1 (protein) Histone H3-like (protein) Histone H4 (protein) Palindromic 146bp Human Alpha satellite DNA (nucleic acid)

3TIG	Download File View File

Tubulin tyrosine ligase

Roll-Mecak, A., Szyk, A., Deaconescu, A., Piszczek, G.

(2011) Nat Struct Mol Biol 18: 1250-1258

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xenopus tropicalis
Macromolecule	Ttl protein (protein)
Unique Ligands	MG

3TII	Download File View File

Tubulin tyrosine ligase

Roll-Mecak, A., Szyk, A., Deaconescu, A., Piszczek, G.

(2011) Nat Struct Mol Biol 18: 1250-1258

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xenopus tropicalis
Macromolecule	Ttl protein (protein)
Unique Ligands	ANP, MG

3TIN	Download File View File

Tubulin tyrosine ligase

Roll-Mecak, A., Szyk, A., Deaconescu, A., Piszczek, G.

(2011) Nat Struct Mol Biol 18: 1250-1258

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Xenopus tropicalis
Macromolecule	Ttl protein (protein)
Unique Ligands	ADP, MG

3ULJ	Download File View File

Crystal structure of apo Lin28B cold shock domain

(2012) Nucleic Acids Res 40: 7492-7506

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Xenopus tropicalis
Macromolecule	Lin28b, DNA-binding protein (protein)
Unique Ligands	ACT, GOL

4A75	Download File View File

The Lin28b Cold shock domain in complex with hexathymidine.

(2012) Nucleic Acids Res 40: 7492

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Xenopus tropicalis synthetic construct
Macromolecule	LIN28 COLD SHOCK DOMAIN (protein) 5'-D(TPTPTPTPTPTP)-3' (nucleic acid)
Unique Ligands	SCN

4A76	Download File View File

The Lin28b Cold shock domain in complex with heptathymidine

(2012) Nucleic Acids Res 40: 7492

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Xenopus tropicalis
Macromolecule	LIN28 COLD SHOCK DOMAIN (protein) 5'-D(TPTPTPTPTPTP*TP)-3' (nucleic acid)

4ALP	Download File View File

The Lin28b Cold shock domain in complex with hexauridine

(2012) Nucleic Acids Res 40: 7492

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Xenopus tropicalis synthetic construct
Macromolecule	LIN28 ISOFORM B (protein) HEXA URIDINE (nucleic acid)
Unique Ligands	GOL

4C8T	Download File View File

Xenopus ZNRF3 ectodomain crystal form I

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Xenopus tropicalis
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3 (protein)

4C8U	Download File View File

Xenopus ZNRF3 ectodomain crystal form II

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Xenopus tropicalis
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3 (protein)
Unique Ligands	BR

4C8V	Download File View File

Xenopus RSPO2 Fu1-Fu2 crystal form I

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xenopus tropicalis
Macromolecule	R-SPONDIN-2 (protein)

4C8W	Download File View File

Xenopus RSPO2 Fu1-Fu2 crystal form II

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Xenopus tropicalis
Macromolecule	R-SPONDIN-2 (protein)

4C9A	Download File View File

Mouse ZNRF3 ectodomain in complex with Xenopus RSPO2 Fu1-Fu2 (Seleno Met) crystal form I

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Xenopus tropicalis
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3 (protein) R-SPONDIN-2 (protein)

4C9E	Download File View File

Mouse ZNRF3 ectodomain in complex with Xenopus RSPO2 Fu1-Fu2 (Seleno Met) crystal form II

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus Xenopus tropicalis
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3 (protein) R-SPONDIN-2 (protein)

4C9R	Download File View File

Xenopus ZNRF3 ectodomain in complex with Xenopus RSPO2 Fu1-Fu2 crystal form I

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xenopus tropicalis
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3 (protein) R-SPONDIN-2 (protein)

4C9U	Download File View File

Xenopus ZNRF3 ectodomain in complex with Xenopus RSPO2 Fu1-Fu2 crystal form II

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Xenopus tropicalis
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3 (protein) R-SPONDIN-2 (protein)

4C9V	Download File View File

Xenopus RNF43 ectodomain in complex with Xenopus RSPO2 Fu1-Fu2

(2013) Nat Commun 4: 2787

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Xenopus tropicalis
Macromolecule	R-SPONDIN-2 (protein) RNF43 (protein)

4HP1	Download File View File

Crystal structure of Tet3 in complex with a non-CpG dsDNA

Chao, X., Tempel, W., Bian, C., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2012) Cell 151: 1200-1213

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Xenopus tropicalis
Macromolecule	LOC100036628 protein (protein) DNA (5'-D(GPCPCPAPCP(5CM)PGPGPTPGPGPC)-3') (nucleic acid)
Unique Ligands	ZN