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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Zika virus"

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Search Summary

This query matches 336 Structures.

Refinements

Structure Determination Methodology

experimental (336)

Scientific Name of Source Organism

	Zika virus (314)
	Homo sapiens (47)
	synthetic construct (22)
	Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013 (21)
	Mus musculus (6)
	Macaca mulatta (4)
	Lama glama (3)
	Escherichia coli BL21(DE3) (1)
	Tetrahymena (1)
	Zika virus ZIKV/Human/Cambodia/FSS13025/2010 (1)

Taxonomy

	Riboviria (336)
	Eukaryota (58)
	other sequences (22)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (295)
	ELECTRON MICROSCOPY (38)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (330)
	RNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (62)
	1.5 - 2.0 (144)
	2.0 - 2.5 (46)
	2.5 - 3.0 (26)
	3.0 - 3.5 (24)
	3.5 - 4.0 (7)
	4.0 - 4.5 (8)
	> 4.5 (16)

Release Date

	2015 - 2019 (97)
	2020 - 2024 (192)
	2025 - 2029 (47)

Enzyme Classification Name

	Hydrolases (208)
	Transferases (32)

Membrane Protein Annotation

	OPM (16)
	MemProtMD (2)

Symmetry Type

	Asymmetric (275)
	Cyclic (35)
	Icosahedral (20)
	Helical (1)

SCOP Classification

	All beta proteins (35)
	Alpha and beta proteins (a/b) (51)
	Small proteins (15)
	Membrane and cell surface proteins and peptides (7)
	Artifacts (8)
	All alpha proteins (3)

AllSelected

1 to 25 of 336 Structures

Page 1 of 14

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5GJ4 \| pdb_00005gj4	Download File View File

Structure of NS2B-NS3 Protease from Zika Virus caught after self-cleavage

Phoo, W.W., Li, Y.

(2016) Nat Commun 7: 13410-13410

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.839 Å
Organisms	Zika virus
Macromolecule	Serine protease NS3 (protein) Serine protease subunit NS2B (protein)
Unique Ligands	CL

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5GJB \| pdb_00005gjb	Download File View File

Zika virus NS3 helicase in complex with ssRNA

Tian, H.L., Ji, X.Y., Yang, X.Y., Zhang, Z.X., Lu, Z.K., Yang, K.L., Chen, C., Zhao, Q., Chi, H., Mu, Z.Y., Xie, W., Wang, Z.F., Lou, H.Q., Yang, H.T., Rao, Z.H.

(2016) Protein Cell 7: 562-570

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.702 Å
Organisms	Zika virus synthetic construct
Macromolecule	NS3 helicase (protein) RNA (5'-R(APGPAPUPCPAP*A)-3') (nucleic acid)

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5GJC \| pdb_00005gjc	Download File View File

Zika virus NS3 helicase in complex with ATP

Tian, H.L., Ji, X.Y., Yang, X.Y., Zhang, Z.X., Lu, Z.K., Yang, K.L., Chen, C., Zhao, Q., Chi, H., Mu, Z.Y., Xie, W., Wang, Z.F., Lou, H.Q., Yang, H.T., Rao, Z.H.

(2016) Protein Cell 7: 562-570

Released	2016-07-20
Method	X-RAY DIFFRACTION 2.204 Å
Organisms	Zika virus
Macromolecule	NS3 helicase (protein)
Unique Ligands	ATP, MN

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5GOZ \| pdb_00005goz	Download File View File

Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAH

Zhang, C., Jin, T.

(2017) Biochem Biophys Res Commun 492: 624-630

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.049 Å
Organisms	Zika virus
Macromolecule	RNA-directed RNA polymerase NS5 (protein)
Unique Ligands	GTP, PO4, POP, SAH, SIN

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5GP1 \| pdb_00005gp1	Download File View File

Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAH

Zhang, C., Jin, T.

(2017) Biochem Biophys Res Commun 492: 624-630

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.444 Å
Organisms	Zika virus
Macromolecule	RNA-directed RNA polymerase NS5 (protein)
Unique Ligands	GTA, NI, SAH, SO4

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5GPI \| pdb_00005gpi	Download File View File

Crystal Structures of Unlinked NS2B-NS3 Protease from Zika Virus and Its Complex with a Reverse Peptide Inhibitor

Phoo, W.W., Zhang, Z.Z.

(2016) Science 354: 1597-1600

Released	2016-12-14
Method	X-RAY DIFFRACTION 1.578 Å
Organisms	Zika virus
Macromolecule	NS2B cofactor (protein) NS3 protease (protein)

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5GS6 \| pdb_00005gs6	Download File View File

Full-length NS1 structure of Zika virus from 2015 Brazil strain

Xu, X.Y., Song, H., Qi, J.X., Shi, Y., Gao, G.F.

(2016) EMBO J 35: 2170-2178

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.852 Å
Organisms	Zika virus
Macromolecule	NS1 of Zika virus from 2015 Brazil strain (protein)
Unique Ligands	NAG

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5GXJ \| pdb_00005gxj	Download File View File

Zika Virus NS2B-NS3 protease

Yang, H., Chen, X., Ji, X., Xiong, Y., Yang, K.

To be published

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Zika virus synthetic construct
Macromolecule	FLAVIVIRUS_NS2B,LINKER,Peptidase S7 (protein)

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5GZN \| pdb_00005gzn	Download File View File

Structure of neutralizing antibody bound to Zika envelope protein

Wang, Q., Yang, H., Liu, X., Dai, L., Ma, T., Qi, J., Wong, G., Peng, R., Liu, S., Li, J., Li, S., Song, J., Liu, J., He, J., Yuan, H., Xiong, Y., Liao, Y., Li, J., Yang, J., Tong, Z., Griffin, B., Bi, Y., Liang, M., Xu, X., Cheng, G., Wang, P., Qiu, X., Kobinger, G., Shi, Y., Yan, J., Gao, G.F.

(2016) Sci Transl Med 8: 369ra179-369ra179

Released	2016-12-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Zika virus
Macromolecule	Antibody Heavy chain (protein) Antibody light chain (protein) Genome polyprotein (protein)

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5GZO \| pdb_00005gzo	Download File View File

Structure of neutralizing antibody bound to Zika envelope protein

(2016) Sci Transl Med 8: 369ra179-369ra179

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.755 Å
Organisms	Homo sapiens Zika virus
Macromolecule	Antibody heavy chain (protein) Antibody light chain (protein) Genome polyprotein (protein)

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5GZR \| pdb_00005gzr	Download File View File

Zika virus E protein complexed with a neutralizing antibody Z23-Fab

Gao, G.G., Shi, Y., Peng, R., Liu, S.

(2016) Sci Transl Med 8: 369ra179-369ra179

Released	2016-11-30
Method	ELECTRON MICROSCOPY 9.4 Å
Organisms	Homo sapiens Zika virus
Macromolecule	Z23 Fab heavy chain (protein) Z23 Fab light chain (protein) structural protein E (protein) strutural protein M (protein)

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5H30 \| pdb_00005h30	Download File View File

Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5

Zhang, S., Kostyuchenko, V., Ng, T.-S., Lok, S.-M.

(2016) Nat Commun 7: 13679-13679

Released	2016-11-30
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Zika virus
Macromolecule	IgG C10 heavy chain (protein) IgG C10 light chain (protein) structural protein E (protein) strutural protein M (protein)

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5H32 \| pdb_00005h32	Download File View File

Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0

Zhang, S., Kostyuchenko, V., Ng, T.-S., Lok, S.-M.

(2016) Nat Commun 7: 13679-13679

Released	2016-11-30
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Homo sapiens Zika virus
Macromolecule	C10 IgG heavy chain variable region (protein) C10 IgG light chain variable region (protein) structural protein E (protein)

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5H37 \| pdb_00005h37	Download File View File

Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0

Zhang, S., Kostyuchenko, V., Ng, T.-S., Lim, X.-N., Ooi, J.S.G., Lambert, S., Tan, T.Y., Widman, D., Shi, J., Baric, R.S., Lok, S.-M.

(2016) Nat Commun 7: 13679-13679

Released	2016-11-30
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Zika virus
Macromolecule	C10 IgG heavy chain variable region (protein) C10 IgG light chain variable region (protein) structural protein E (protein) strutural protein M (protein)
Unique Ligands	NAG

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5H4I \| pdb_00005h4i	Download File View File

Unlinked NS2B-NS3 Protease from Zika Virus in complex with a compound fragment

Zhang, Z.Z., Li, Y.

(2016) Science 354: 1597-1600

Released	2016-12-14
Method	X-RAY DIFFRACTION 2.004 Å
Organisms	Zika virus
Macromolecule	NS2B cofactor (protein) NS3 protease (protein)
Unique Ligands	7HQ, ACT

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5H6V \| pdb_00005h6v	Download File View File

Structure of Zika virus protease in complex with a dipeptide inhibitor

Zhang, Z., Chen, M.

(2017) Structure 25: 1242-1250.e3

Released	2017-06-14
Method	X-RAY DIFFRACTION 2.422 Å
Organisms	Zika virus
Macromolecule	Genome polyprotein (protein)
Unique Ligands	7HS

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5IRE \| pdb_00005ire	Download File View File

The cryo-EM structure of Zika Virus

Sirohi, D., Chen, Z., Sun, L., Klose, T., Pierson, T., Rossmann, M., Kuhn, R.

(2016) Science 352: 467-470

Released	2016-03-30
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Zika virus
Macromolecule	E protein (protein) M protein (protein)
Unique branched monosaccharides	NAG

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5IY3 \| pdb_00005iy3	Download File View File

Zika Virus Non-structural Protein NS1

Song, H., Qi, J., Shi, Y., Gao, G.F.

(2016) Nat Struct Mol Biol 23: 456-458

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Zika virus
Macromolecule	Genome polyprotein (protein)

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5IZ7 \| pdb_00005iz7	Download File View File

Cryo-EM structure of thermally stable Zika virus strain H/PF/2013

Kostyuchenko, V.A., Zhang, S., Fibriansah, G., Lok, S.M.

(2016) Nature 533: 425-428

Released	2016-05-25
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Zika virus
Macromolecule	structural protein E (protein) structural protein M (protein)
Unique Ligands	NAG

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5JHL \| pdb_00005jhl	Download File View File

Crystal structure of zika virus envelope protein in complex with a flavivirus broadly-protective antibody

Dai, L., Shi, Y., Qi, J., Gao, G.F.

(2016) Cell Host Microbe 19: 696-704

Released	2016-05-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus Zika virus
Macromolecule	Antibody Heavy chain (protein) antibody Light chain (protein) envelope protein (protein)