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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 1.2.1.12

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Search Summary

This query matches 156 Structures.

Refinements

Structure Determination Methodology

experimental (156)

Scientific Name of Source Organism

	Homo sapiens (24)
	Staphylococcus aureus subsp. aureus MRSA252 (14)
	Escherichia coli (12)
	Geobacillus stearothermophilus (11)
	Corynebacterium glutamicum ATCC 13032 (5)
	Leishmania mexicana (5)
	Panulirus versicolor (5)
	Trypanosoma cruzi (5)
	Cryptosporidium parvum (4)
	Escherichia coli K-12 (4)

More...

Taxonomy

	Eukaryota (84)
	Bacteria (72)
	Archaea (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (147)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

Protein (156)

Refinement Resolution (Å)

	1.5 - 2.0 (38)
	2.0 - 2.5 (70)
	2.5 - 3.0 (36)
	3.0 - 3.5 (10)
	3.5 - 4.0 (2)

Release Date

	1975 - 1979 (1)
	1980 - 1984 (1)
	1985 - 1989 (3)
	1995 - 1999 (14)
	2000 - 2004 (21)
	2005 - 2009 (24)
	2010 - 2014 (28)
	2015 - 2019 (28)
	2020 - 2024 (36)

Enzyme Classification Name

	Oxidoreductases (156)
	Transferases (29)

Symmetry Type

	Dihedral (144)
	Asymmetric (9)
	Cyclic (21)

SCOP Classification

	Alpha and beta proteins (a+b) (57)
	Alpha and beta proteins (a/b) (57)
	Artifacts (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 156 Structures

Page 1 of 7

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1A7K \| pdb_00001a7k	Download File View File

GLYCOSOMAL GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE IN A MONOCLINIC CRYSTAL FORM

Kim, H., Hol, W.G.J.

(1998) J Mol Biology 278: 5-11

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Leishmania mexicana
Macromolecule	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD, PO4

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1B7G \| pdb_00001b7g	Download File View File

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE

Isupov, M.N., Littlechild, J.A.

(1999) J Mol Biology 291: 651-660

Released	1999-10-08
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharolobus solfataricus
Macromolecule	PROTEIN (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE) (protein)
Unique Ligands	SO4

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1CER \| pdb_00001cer	Download File View File

DETERMINANTS OF ENZYME THERMOSTABILITY OBSERVED IN THE MOLECULAR STRUCTURE OF THERMUS AQUATICUS D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 2.5 ANGSTROMS RESOLUTION

Tanner, J.J., Hecht, R.M., Krause, K.L.

(1996) Biochemistry 35: 2597-2609

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus aquaticus
Macromolecule	HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD

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1CF2 \| pdb_00001cf2	Download File View File

THREE-DIMENSIONAL STRUCTURE OF D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC ARCHAEON METHANOTHERMUS FERVIDUS

Charron, C., Talfournier, F., Isuppov, M.N., Branlant, G., Littlechild, J.A., Vitoux, B., Aubry, A.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1353-1355

Released	2000-03-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanothermus fervidus
Macromolecule	PROTEIN (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE) (protein)
Unique Ligands	NAP, SO4

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1CRW \| pdb_00001crw	Download File View File

CRYSTAL STRUCTURE OF APO-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM PALINURUS VERSICOLOR AT 2.0A RESOLUTION

Shen, Y., Li, J., Song, S., Lin, Z.

(2000) J Struct Biol 130: 1-9

Released	2000-09-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Panulirus versicolor
Macromolecule	D-GLYCERALDEHYDE-3-PHOSPHATE-DEHYDROGENASE (protein)

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1DBV \| pdb_00001dbv	Download File View File

GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH ASP 32 REPLACED BY GLY, LEU 187 REPLACED BY ALA, AND PRO 188 REPLACED BY SER COMPLEXED WITH NAD+

Didierjean, C., Rahuel-Clermont, S., Vitoux, B., Dideberg, O., Branlant, G., Aubry, A.

(1997) J Mol Biology 268: 739-759

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

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1DC3 \| pdb_00001dc3	Download File View File

STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES

Yun, M., Park, C.G., Kim, J.Y., Park, H.W.

(2000) Biochemistry 39: 10702-10710

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (protein)

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1DC4 \| pdb_00001dc4	Download File View File

STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES

Yun, M., Park, C.-G., Kim, J.-Y., Park, H.-W.

(2000) Biochemistry 39: 10702-10710

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	G3P

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1DC5 \| pdb_00001dc5	Download File View File

STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES

Yun, M., Park, C.-G., Kim, J.-Y., Park, H.-W.

(2000) Biochemistry 39: 10702-10710

Released	2000-08-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)

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1DC6 \| pdb_00001dc6	Download File View File

STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES.

Yun, M., Park, C.-G., Kim, J.-Y., Park, H.-W.

(2000) Biochemistry 39: 10702-10710

Released	2000-08-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD

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1DSS \| pdb_00001dss	Download File View File

STRUCTURE OF ACTIVE-SITE CARBOXYMETHYLATED D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM PALINURUS VERSICOLOR

Song, S., Lin, Z.

(1999) J Mol Biology 287: 719-725

Released	1998-12-09
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Panulirus versicolor
Macromolecule	D-GLYCERALDEHYDE-3-PHOSPHATE-DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

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1GAD \| pdb_00001gad	Download File View File

COMPARISON OF THE STRUCTURES OF WILD TYPE AND A N313T MUTANT OF ESCHERICHIA COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASES: IMPLICATION FOR NAD BINDING AND COOPERATIVITY

Duee, E., Olivier-Deyris, L., Fanchon, E., Corbier, C., Branlant, G., Dideberg, O.

(1996) J Mol Biology 257: 814-838

Released	1996-03-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD

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1GAE \| pdb_00001gae	Download File View File

COMPARISON OF THE STRUCTURES OF WILD TYPE AND A N313T MUTANT OF ESCHERICHIA COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASES: IMPLICATION FOR NAD BINDING AND COOPERATIVITY

Duee, E., Olivier-Deyris, L., Fanchon, E., Corbier, C., Branlant, G., Dideberg, O.

(1996) J Mol Biology 257: 814-838

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Escherichia coli
Macromolecule	D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD

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1GD1 \| pdb_00001gd1	Download File View File

STRUCTURE OF HOLO-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS AT 1.8 ANGSTROMS RESOLUTION

Skarzynski, T., Moody, P.C.E., Wonacott, A.J.

(1987) J Mol Biology 193: 171-187

Released	1988-01-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

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1GPD \| pdb_00001gpd	Download File View File

STUDIES OF ASYMMETRY IN THE THREE-DIMENSIONAL STRUCTURE OF LOBSTER D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

Moras, D., Olsen, K.W., Sabesan, M.N., Buehner, M., Ford, G.C., Rossmann, M.G.

(1975) J Biological Chem 250: 9137-9162

Released	1977-02-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homarus americanus
Macromolecule	D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD, PO4

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1GYP \| pdb_00001gyp	Download File View File

CRYSTAL STRUCTURE OF GLYCOSOMAL GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM LEISHMANIA MEXICANA: IMPLICATIONS FOR STRUCTURE-BASED DRUG DESIGN AND A NEW POSITION FOR THE INORGANIC PHOSPHATE BINDING SITE

Kim, H., Feil, I.K., Verlinde, C.L.M.J., Petra, P.H., Hol, W.G.J.

(1995) Biochemistry 34: 14975-14986

Released	1995-12-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Leishmania mexicana
Macromolecule	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD, PO4

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1GYQ \| pdb_00001gyq	Download File View File

CRYSTAL STRUCTURE OF GLYCOSOMAL GLYCERALDEHYDE FROM LEISHMANIA MEXICANA IN COMPLEX WITH N6-BENZYL-NAD

Suresh, S., Hol, W.

(1999) Proc Natl Acad Sci U S A 96: 4273-4278

Released	1999-03-16
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Leishmania mexicana
Macromolecule	PROTEIN (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE) (protein)
Unique Ligands	NBD

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1HDG \| pdb_00001hdg	Download File View File

THE CRYSTAL STRUCTURE OF HOLO-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC BACTERIUM THERMOTOGA MARITIMA AT 2.5 ANGSTROMS RESOLUTION

Korndoerfer, I., Steipe, B., Huber, R., Tomschy, A., Jaenicke, R.

(1995) J Mol Biology 246: 511-521

Released	1995-03-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermotoga maritima
Macromolecule	HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

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1I32 \| pdb_00001i32	Download File View File

LEISHMANIA MEXICANA GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH INHIBITORS

Suresh, S., Bressi, J.C., Kennedy, K.J., Verlinde, C.L.M.J., Gelb, M.H., Hol, W.G.J.

(2001) J Mol Biology 309: 423-435

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Leishmania mexicana
Macromolecule	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NMD

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1I33 \| pdb_00001i33	Download File View File

LEISHMANIA MEXICANA GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH INHIBITORS

Suresh, S., Bressi, J.C., Kennedy, K.J., Verlinde, C.L.M.J., Gelb, M.H., Hol, W.G.J.

(2001) J Mol Biology 309: 423-435

Released	2001-10-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Leishmania mexicana
Macromolecule	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	TND

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1IHX \| pdb_00001ihx	Download File View File

Crystal structure of two D-glyceraldehyde-3-phosphate dehydrogenase complexes: a case of asymmetry

Shen, Y.-Q., Song, S.-Y., Lin, Z.-J.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1287-1297

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Panulirus versicolor
Macromolecule	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	SND, SO4

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1IHY \| pdb_00001ihy	Download File View File

GAPDH complexed with ADP-ribose

Shen, Y.-Q., Song, S.-Y., Lin, Z.-J.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1287-1297

Released	2002-07-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Panulirus versicolor
Macromolecule	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	APR, SO4

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1J0X \| pdb_00001j0x	Download File View File

Crystal structure of the rabbit muscle glyceraldehyde-3-phosphate dehydrogenase (GAPDH)

Cowan-Jacob, S.W., Kaufmann, M., Anselmo, A.N., Stark, W., Grutter, M.G.

(2003) Acta Crystallogr D Biol Crystallogr 59: 2218-2227

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Oryctolagus cuniculus
Macromolecule	glyceraldehyde-3-phosphate dehydrogenase (protein)
Unique Ligands	NAD

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1K3T \| pdb_00001k3t	Download File View File

Structure of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase from Trypanosoma cruzi Complexed with Chalepin, a Coumarin Derivative Inhibitor

Pavao, F.

(2002) FEBS Lett 520: 13-17

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trypanosoma cruzi
Macromolecule	Glyceraldehyde-3-phosphate dehydrogenase (protein)
Unique Ligands	BRZ

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1ML3 \| pdb_00001ml3	Download File View File

Evidences for a flip-flop catalytic mechanism of Trypanosoma cruzi glyceraldehyde-3-phosphate dehydrogenase, from its crystal structure in complex with reacted irreversible inhibitor 2-(2-phosphono-ethyl)-acrylic acid 4-nitro-phenyl ester

Castilho, M.S., Pavao, F., Oliva, G.

(2003) Biochemistry 42: 7143-7151

Released	2003-07-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Trypanosoma cruzi
Macromolecule	Glyceraldehyde 3-phosphate dehydrogenase, glycosomal (protein)
Unique Ligands	CYX, NAD

1 to 25 of 156 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A7K | pdb_00001a7k

1B7G | pdb_00001b7g

1CER | pdb_00001cer

1CF2 | pdb_00001cf2

1CRW | pdb_00001crw

1DBV | pdb_00001dbv

1DC3 | pdb_00001dc3

1DC4 | pdb_00001dc4

1DC5 | pdb_00001dc5

1DC6 | pdb_00001dc6

1DSS | pdb_00001dss

1GAD | pdb_00001gad

1GAE | pdb_00001gae

1GD1 | pdb_00001gd1

1GPD | pdb_00001gpd

1GYP | pdb_00001gyp

1GYQ | pdb_00001gyq

1HDG | pdb_00001hdg

1I32 | pdb_00001i32

1I33 | pdb_00001i33

1IHX | pdb_00001ihx

1IHY | pdb_00001ihy

1J0X | pdb_00001j0x

1K3T | pdb_00001k3t

1ML3 | pdb_00001ml3