RCSB PDB: Search

1GBN \| pdb_00001gbn	Download File View File

HUMAN ORNITHINE AMINOTRANSFERASE COMPLEXED WITH THE NEUROTOXIN GABACULINE

Shah, S.A., Shen, B.W., Brunger, A.T.

(1997) Structure 5: 1067-1075

Released	1998-06-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE AMINOTRANSFERASE (protein)
Unique Ligands	GAB, GBC, PLP

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1OAT \| pdb_00001oat	Download File View File

ORNITHINE AMINOTRANSFERASE

Shen, B.W., Schirmer, T., Jansonius, J.N.

(1998) J Mol Biology 277: 81-102

Released	1998-04-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE AMINOTRANSFERASE (protein)
Unique Ligands	PLP

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1Z7D \| pdb_00001z7d	Download File View File

Ornithine aminotransferase PY00104 from Plasmodium Yoelii

Walker, J.R., Alam, Z., Amani, M., Lew, J., Wasney, G., Boulanger, K., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Hui, R., Vedadi, M., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-07-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium yoelii yoelii
Macromolecule	ornithine aminotransferase (protein)

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2BYJ \| pdb_00002byj	Download File View File

Ornithine aminotransferase mutant Y85I

Markova, M., Peneff, C., Hewlins, M.J.E., Schirmer, T., John, R.A.

(2005) J Biological Chem 280: 36409

Released	2005-09-07
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE AMINOTRANSFERASE (protein)
Unique Ligands	PLP

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2BYL \| pdb_00002byl	Download File View File

Structure of ornithine aminotransferase triple mutant Y85I Y55A G320F

Markova, M., Peneff, C., Hewlins, M.J.E., Schirmer, T., John, R.A.

(2005) J Biological Chem 280: 36409

Released	2005-09-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE AMINOTRANSFERASE (protein)
Unique Ligands	PLP

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2CAN \| pdb_00002can	Download File View File

HUMAN ORNITHINE AMINOTRANSFERASE COMPLEXED WITH L-CANALINE

Shah, S.A., Shen, B.W., Brunger, A.T.

(1997) Structure 5: 1067-1075

Released	1998-06-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE AMINOTRANSFERASE (protein)
Unique Ligands	CAN, PLP

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2OAT \| pdb_00002oat	Download File View File

ORNITHINE AMINOTRANSFERASE COMPLEXED WITH 5-FLUOROMETHYLORNITHINE

Storici, P., Schirmer, T.

(1999) J Mol Biology 285: 297-309

Released	1998-12-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE AMINOTRANSFERASE (protein)
Unique Ligands	PFM

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3LG0 \| pdb_00003lg0	Download File View File

Structure of Plasmodium falciparum ornithine delta-aminotransferase

Fritz-Wolf, K., Jortzik, E., Stumpf, M., Becker, K.

(2010) J Mol Biology 402: 445-459

Released	2010-08-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Plasmodium falciparum CDC/Honduras
Macromolecule	Ornithine aminotransferase (protein)

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3NTJ \| pdb_00003ntj	Download File View File

Redox regulation of Plasmodium falciparum ornithine delta-aminotransferase

Fritz-Wolf, K., Jortzik, E., Stumpf, M., Becker, K.

(2010) J Mol Biology 402: 445-459

Released	2010-08-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Ornithine aminotransferase (protein)
Unique Ligands	SO4

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3RUY \| pdb_00003ruy	Download File View File

Crystal Structure of the Ornithine-oxo acid transaminase RocD from Bacillus anthracis

Anderson, S.M., Wawrzak, Z., Brunzelle, J.S., Onopriyenko, O., Peterson, S.N., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2011-05-18
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Bacillus anthracis str. 'Ames Ancestor
Macromolecule	Ornithine aminotransferase (protein)

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4NOG \| pdb_00004nog	Download File View File

Crystal structure of a putative ornithine aminotransferase from Toxoplasma gondii ME49 in complex with pyrodoxal-5'-phosphate

Filippova, E.V., Halavaty, A., Ruan, J., Shuvalova, L., Flores, K., Dubrovska, I., Ngo, H., Shanmugam, D., Roos, D., Anderson, W.F., Center for Structural Genomics of Infectious Diseases, Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) Front Cell Infect Microbiol 8: 352-352

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Toxoplasma gondii ME49
Macromolecule	Putative ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	ACT, BME, BTB, PEG, PLP

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4ZLV \| pdb_00004zlv	Download File View File

Crystal structure of the ornithine aminotransferase from Toxoplasma gondii ME49 in a complex with the Schiff base between PLP and Lys286

Filippova, E.V., Minasov, G., Flores, K., Van Le, H., Silverman, R.B., McLeod, R., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2015-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Toxoplasma gondii ME49
Macromolecule	Ornithine aminotransferase, mitochondrial, putative (protein)
Unique Ligands	PEG, PLP, SO4

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4ZWM \| pdb_00004zwm	Download File View File

2.3 A resolution crystal structure of the ornithine aminotransferase from Toxoplasma gondii ME49

Filippova, E.V., Minasov, G., Flores, K., Van Le, H., Silverman, R.B., McLeod, R., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Toxoplasma gondii ME49
Macromolecule	Ornithine aminotransferase, mitochondrial, putative (protein)
Unique Ligands	PLP, SO4

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5DJ9 \| pdb_00005dj9	Download File View File

Crystal structure of the ornithine aminotransferase from Toxoplasma gondii ME49 in a complex with gabaculine

Filippova, E.V., Minasov, G., Flores, K., Le, H.V., Silverman, R.B., McLeod, R.L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2016-10-05
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Toxoplasma gondii ME49
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	BTB, PXG, SO4, TRS

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5E3K \| pdb_00005e3k	Download File View File

Crystal structure of the ornithine aminotransferase from Toxoplasma gondii ME49 in a complex with (S)-4-amino-5-fluoropentanoic acid

Filippova, E.V., Minasov, G., Flores, K., Le, H.V., Silverman, R.B., McLeod, R.L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Toxoplasma gondii ME49
Macromolecule	Aminotransferase (protein)
Unique Ligands	5JV, CO3, PEG, SO4

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5E5I \| pdb_00005e5i	Download File View File

Structure of the ornithine aminotransferase from Toxoplasma gondii in complex with inactivator

Filippova, E.V., Minasov, G., Flores, K., Le, H.V., Silverman, R.B., McLeod, R.L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Toxoplasma gondii
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	5JV, 5NJ, PEG, SO4

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5EAV \| pdb_00005eav	Download File View File

Unliganded structure of the ornithine aminotransferase from Toxoplasma gondii

Filippova, E.V., Minasov, G., Flores, K., Le, H.V., Silverman, R.B., McLeod, R.L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2015-11-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Toxoplasma gondii ME49
Macromolecule	Ornithine aminotransferase, mitochondrial, putative (protein)
Unique Ligands	PEG, SO4

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5EQC \| pdb_00005eqc	Download File View File

Structure of the ornithine aminotransferase from Toxoplasma gondii crystallized in presence of oxidized glutathione reveals partial occupancy of PLP at the protein active site

Filippova, E.V., Minasov, G., Flores, K., Le, H.V., Silverman, R.B., McLeod, R.L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2016-02-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Toxoplasma gondii
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	BGC, BME, BTB, GLC, PEG, PLP, TRS

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5VIU \| pdb_00005viu	Download File View File

Crystal Structure of Acetylornithine Aminotransferase from Elizabethkingia anophelis

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2017-05-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Elizabethkingia anophelis
Macromolecule	Acetylornithine aminotransferase (protein)
Unique Ligands	CIT, EDO

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5VWO \| pdb_00005vwo	Download File View File

Ornithine aminotransferase inactivated by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)

Mascarenhas, R., Liu, D., Le, H., Silverman, R.

(2017) Biochemistry 56: 4951-4961

Released	2017-08-30
Method	X-RAY DIFFRACTION 1.773 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	9QJ

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6HX7 \| pdb_00006hx7	Download File View File

Crystal structure of human R180T variant of ORNITHINE AMINOTRANSFERASE at 1.8 Angstrom

Giardina, G., Montioli, R., Cellini, B., Cutruzzola, F., Borri Voltattorni, C.

(2019) FEBS J 286: 2787-2798

Released	2019-06-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	PLP

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6OIA \| pdb_00006oia	Download File View File

(1S,3S)-3-amino-4-(perfluoropropan-2-ylidene)cyclopentane-1-carboxylic acid hydrochloride, a potent inhibitor of ornithine aminotransferase

Catlin, D.S., Liu, D., Moschitto, M.J., Doubleday, P.F., Kelleher, N., Silverman, R.B.

(2019) J Am Chem Soc 141: 10711-10721

Released	2019-09-18
Method	X-RAY DIFFRACTION 1.777 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	GOL, MQ4, PLP

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6V8C \| pdb_00006v8c	Download File View File

Design, Synthesis, and Mechanism of Fluorine-substituted Cyclohexene Analogues of GAMA-Aminobutyric Acid (GABA) as Selective Ornithine Aminotransferase Inactivators

Zhu, W., Doubleday, P.T., Catlin, D.S., Weerawarna, P., Butrin, A., Shen, S., Kelleher, N.L., Liu, D., Silverman, R.B.

To be published

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	PLP, QRM

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6V8D \| pdb_00006v8d	Download File View File

Design, Synthesis, and Mechanism of Fluorine-substituted Cyclohexene Analogues of GAMA-Aminobutyric Acid (GABA) as Selective Ornithine Aminotransferase Inactivators

Zhu, W., Doubleday, P.T., Catlin, D.S., Weerawarna, P., Butrin, A., Shen, S., Kelleher, N.L., Liu, D., Silverman, R.B.

To be published

Released	2020-12-16
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	O78, PLP

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7JX9 \| pdb_00007jx9	Download File View File

The crystal structure of human ornithine aminotransferase with an intermediate bound during inactivation by (1S,3S)-3-amino-4-(hexafluoropropan-2-ylidenyl)-cyclopentane-1-carboxylic acid.

Butrin, A., Beaupre, B., Shen, S., Silverman, R.B., Moran, G., Liu, D.

(2021) ACS Chem Biol 16: 67-75

Released	2021-01-06
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	IF1, VLS

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1GBN | pdb_00001gbn

1OAT | pdb_00001oat

1Z7D | pdb_00001z7d

2BYJ | pdb_00002byj

2BYL | pdb_00002byl

2CAN | pdb_00002can

2OAT | pdb_00002oat

3LG0 | pdb_00003lg0

3NTJ | pdb_00003ntj

3RUY | pdb_00003ruy

4NOG | pdb_00004nog

4ZLV | pdb_00004zlv

4ZWM | pdb_00004zwm

5DJ9 | pdb_00005dj9

5E3K | pdb_00005e3k

5E5I | pdb_00005e5i

5EAV | pdb_00005eav

5EQC | pdb_00005eqc

5VIU | pdb_00005viu

5VWO | pdb_00005vwo

6HX7 | pdb_00006hx7

6OIA | pdb_00006oia

6V8C | pdb_00006v8c

6V8D | pdb_00006v8d

7JX9 | pdb_00007jx9