RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 4.1.1.23

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 239 Structures.

Refinements

Structure Determination Methodology

experimental (239)

Scientific Name of Source Organism

	Methanothermobacter thermautotrophicus str. Delta H (73)
	Homo sapiens (62)
	Methanothermobacter thermautotrophicus (39)
	Plasmodium falciparum 3D7 (10)
	Plasmodium falciparum (9)
	Saccharomyces cerevisiae (7)
	Escherichia coli (3)
	Klebsiella aerogenes (3)
	Pyrococcus horikoshii OT3 (3)
	Archaea (2)

More...

Taxonomy

	Archaea (128)
	Eukaryota (93)
	Bacteria (18)

Experimental Method

X-RAY DIFFRACTION (239)

Polymer Entity Type

Protein (239)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (98)
	1.5 - 2.0 (101)
	2.0 - 2.5 (21)
	2.5 - 3.0 (12)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (22)
	2005 - 2009 (73)
	2010 - 2014 (112)
	2015 - 2019 (3)
	2020 - 2024 (29)

Enzyme Classification Name

	Lyases (239)
	Transferases (65)

Symmetry Type

	Cyclic (238)
	Asymmetric (8)

SCOP Classification

	Alpha and beta proteins (a/b) (166)
	Artifacts (19)

AllSelected

1 to 25 of 239 Structures

Page 1 of 10

Sort by

Explore in 3D

1DBT \| pdb_00001dbt	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM BACILLUS SUBTILIS COMPLEXED WITH UMP

Appleby, T.C., Kinsland, C.L., Begley, T.P., Ealick, S.E.

(2000) Proc Natl Acad Sci U S A 97: 2005-2010

Released	2000-03-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	U5P

Explore in 3D

1DQW \| pdb_00001dqw	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE

Milburn, M.V., Miller, B.G., Hassell, A.M., Wolfenden, R., Short, S.A.

(2000) Proc Natl Acad Sci U S A 97: 2011-2016

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)

Explore in 3D

1DQX \| pdb_00001dqx	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE COMPLEXED TO 6-HYDROXYURIDINE 5'-PHOSPHATE (BMP)

Milburn, M.V., Miller, B.G., Hassell, A.M., Wolfenden, R., Short, S.A.

(2000) Proc Natl Acad Sci U S A 97: 2011-2016

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	BMP

Explore in 3D

1DV7 \| pdb_00001dv7	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)

Explore in 3D

1DVJ \| pdb_00001dvj	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 6-AZAUMP

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

Explore in 3D

1EIX \| pdb_00001eix	Download File View File

STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM E. COLI, CO-CRYSTALLISED WITH THE INHIBITOR BMP

Harris, P., Poulsen, J.C.N., Jensen, K.F., Larsen, S.

(2000) Biochemistry 39: 4217-4224

Released	2000-03-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	BMQ

Explore in 3D

1JJK \| pdb_00001jjk	Download File View File

Selenomethionine Substitution of Orotidine-5'-monophosphate Decarboxylase from E. coli Causes a Change in Crystal Contacts and Space Group

Poulsen, J.-C.N., Harris, P., Jensen, K.F., Larsen, S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1251-1259

Released	2001-08-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	BMP

Explore in 3D

1KLY \| pdb_00001kly	Download File View File

Orotidine monophosphate decarboxylase D70G mutant complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

Explore in 3D

1KLZ \| pdb_00001klz	Download File View File

Crystal structure of orotidine monophosphate decarboxylase mutant D70A complexed with UMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	CL, U5P

Explore in 3D

1KM0 \| pdb_00001km0	Download File View File

Crystal structure of orotidine monophosphate decarboxylase mutant D70N complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

Explore in 3D

1KM1 \| pdb_00001km1	Download File View File

Orotidine monophosphate decarboxylase mutant S127A crystal structure

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

Explore in 3D

1KM2 \| pdb_00001km2	Download File View File

crystal structure of orotidine monophosphate mutant Q185A with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

Explore in 3D

1KM3 \| pdb_00001km3	Download File View File

crystal structure of ODCase mutant K42A complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

Explore in 3D

1KM4 \| pdb_00001km4	Download File View File

crystal structure of ODCase mutant K72A complexed with UMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	U5P

Explore in 3D

1KM5 \| pdb_00001km5	Download File View File

Crystal structure of ODCase mutant D75N complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	CL, UP6

Explore in 3D

1KM6 \| pdb_00001km6	Download File View File

Crystal structure of ODCase mutant D70AK72A complexed with OMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	OMP

Explore in 3D

1L2U \| pdb_00001l2u	Download File View File

Orotidine 5'-monophosphate decarboxylase from E. coli

Harris, P., Poulsen, J.C., Jensen, K.F., Larsen, S.

(2002) J Mol Biology 18: 1019-1029

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)

Explore in 3D

1LOL \| pdb_00001lol	Download File View File

Crystal structure of orotidine monophosphate decarboxylase complex with XMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	BU2, XMP

Explore in 3D

1LOQ \| pdb_00001loq	Download File View File

Crystal structure of orotidine monophosphate decarboxylase complexed with product UMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Archaea
Macromolecule	orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	U5P

Explore in 3D

1LOR \| pdb_00001lor	Download File View File

crystal structure of orotidine 5'-monophosphate complexed with BMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	orotidine monophosphate decarboxylase (protein)
Unique Ligands	BMP

Explore in 3D

1LOS \| pdb_00001los	Download File View File

crystal structure of orotidine monophosphate decarboxylase mutant deltaR203A complexed with 6-azaUMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	orotidine monophosphate decarboxylase (protein)
Unique Ligands	UP6

Explore in 3D

1LP6 \| pdb_00001lp6	Download File View File

Crystal structure of orotidine monophosphate decarboxylase complexed with CMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Archaea
Macromolecule	orotidine monophosphate decarboxylase (protein)
Unique Ligands	C5P

Explore in 3D

1VQT \| pdb_00001vqt	Download File View File

Crystal structure of Orotidine 5'-phosphate decarboxylase (TM0332) from Thermotoga maritima at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2005-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	EDO

Explore in 3D

1X1Z \| pdb_00001x1z	Download File View File

Orotidine 5'-monophosphate decarboxylase (odcase) complexed with BMP (produced from 6-cyanoump)

Fujihashi, M., Bello, A.M., Poduch, E., Wei, L., Annedi, S.C., Pai, E.F., Kotra, L.P.

(2005) J Am Chem Soc 127: 15048-15050

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	BMP, GOL

Explore in 3D

2AQW \| pdb_00002aqw	Download File View File

Structure of putative orotidine-monophosphate-decarboxylase from Plasmodium yoelii (PY01515)

Dong, A., Vedadi, M., Wasney, G., Zhao, Y., Lew, J., Alam, Z., Melone, M., Koeieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Amani, M., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium yoelii
Macromolecule	putative orotidine-monophosphate-decarboxylase (protein)
Unique Ligands	IOD, SO4

1 to 25 of 239 Structures

Page 1 of 10

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DBT | pdb_00001dbt

1DQW | pdb_00001dqw

1DQX | pdb_00001dqx

1DV7 | pdb_00001dv7

1DVJ | pdb_00001dvj

1EIX | pdb_00001eix

1JJK | pdb_00001jjk

1KLY | pdb_00001kly

1KLZ | pdb_00001klz

1KM0 | pdb_00001km0

1KM1 | pdb_00001km1

1KM2 | pdb_00001km2

1KM3 | pdb_00001km3

1KM4 | pdb_00001km4

1KM5 | pdb_00001km5

1KM6 | pdb_00001km6

1L2U | pdb_00001l2u

1LOL | pdb_00001lol

1LOQ | pdb_00001loq

1LOR | pdb_00001lor

1LOS | pdb_00001los

1LP6 | pdb_00001lp6

1VQT | pdb_00001vqt

1X1Z | pdb_00001x1z

2AQW | pdb_00002aqw