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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 5.1.1.3

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Helicobacter pylori (10)
	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
	Enterococcus faecalis (3)
	Enterococcus faecium (3)
	Streptococcus pyogenes M1 GAS (3)
	Aquifex pyrophilus (2)
	Bacillus anthracis (2)
	Listeria monocytogenes EGD-e (2)
	Thermus thermophilus (2)
	Bacillus subtilis (1)

More...

Taxonomy

	Bacteria (38)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (39)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.5 - 2.0 (21)
	2.0 - 2.5 (12)
	2.5 - 3.0 (6)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (22)
	2010 - 2014 (5)
	2015 - 2019 (5)
	2020 - 2024 (4)
	2025 - 2029 (1)

Enzyme Classification Name

	Isomerases (39)
	Lyases (1)

Symmetry Type

	Cyclic (32)
	Asymmetric (7)
	Dihedral (3)

SCOP Classification

Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 39 Structures

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1B73 \| pdb_00001b73	Download File View File

GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS

Hwang, K.Y., Cho, C.S., Kim, S.S., Yu, Y.G., Cho, Y.

(1999) Nat Struct Biol 6: 422-426

Released	1999-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex pyrophilus
Macromolecule	GLUTAMATE RACEMASE (protein)

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1B74 \| pdb_00001b74	Download File View File

GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS

Hwang, K.Y., Cho, C.S., Kim, S.S., Yu, Y.G., Cho, Y.

(1999) Nat Struct Biol 6: 422-426

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex pyrophilus
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGN

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1ZUW \| pdb_00001zuw	Download File View File

Crystal structure of B.subtilis glutamate racemase (RacE) with D-Glu

Ruzheinikov, S.N., Taal, M.A., Sedelnikova, S.E., Baker, P.J., Rice, D.W.

(2005) Structure 13: 1707-1713

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bacillus subtilis
Macromolecule	glutamate racemase 1 (protein)
Unique Ligands	DGL

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2DWU \| pdb_00002dwu	Download File View File

Crystal Structure of Glutamate Racemase Isoform RacE1 from Bacillus anthracis

Mehboob, S., Santarsiero, B.D., Johnson, M.E.

(2007) J Mol Biology 371: 1219-1237

Released	2007-06-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus anthracis
Macromolecule	Glutamate racemase (protein)
Unique Ligands	DGL, GOL, K

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2GZM \| pdb_00002gzm	Download File View File

Crystal Structure of the Glutamate Racemase from Bacillus anthracis

May, M., Santarsiero, B.D., Johnson, M.E., Mesecar, A.D.

(2007) J Mol Biology 371: 1219-1237

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Bacillus anthracis
Macromolecule	Glutamate racemase (protein)
Unique Ligands	DGL

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2JFN \| pdb_00002jfn	Download File View File

Crystal structure of Escherichia coli glutamate racemase in complex with L- Glutamate and activator UDP-MurNAc-ala

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	GLU, UMA

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2JFO \| pdb_00002jfo	Download File View File

Crystal structure of Enterococcus faecalis glutamate racemase in complex with D- and L-Glutamate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterococcus faecalis
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL, GLU

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2JFP \| pdb_00002jfp	Download File View File

Crystal structure of Enterococcus faecalis glutamate racemase in complex with D- Glutamate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Enterococcus faecalis
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	CA, DGL

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2JFQ \| pdb_00002jfq	Download File View File

Crystal structure of Staphylococcus aureus glutamate racemase in complex with D- Glutamate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Staphylococcus aureus
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL

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2JFU \| pdb_00002jfu	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with phosphate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	PO4

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2JFV \| pdb_00002jfv	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with citrate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	FLC

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2JFW \| pdb_00002jfw	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with tartrate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	TLA

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2JFX \| pdb_00002jfx	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate

Xue, Y., Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL

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2JFY \| pdb_00002jfy	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate

Lundqvist, T.

(2007) Nature 447: 817

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Helicobacter pylori
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL

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2JFZ \| pdb_00002jfz	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate and an inhibitor

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Helicobacter pylori
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	003, DGL

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2OHG \| pdb_00002ohg	Download File View File

Structural Basis for Glutamte Racemase Inhibition

Kim, E.E.

(2007) J Mol Biology 372: 434-443

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptococcus pyogenes M1 GAS
Macromolecule	Glutamate racemase (protein)

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2OHO \| pdb_00002oho	Download File View File

Structural Basis for Glutamate Racemase Inhibitor

Kim, E.E.

(2007) J Mol Biology 372: 434-443

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Streptococcus pyogenes M1 GAS
Macromolecule	Glutamate Racemase (protein)
Unique Ligands	SO4

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2OHV \| pdb_00002ohv	Download File View File

Structural Basis for Glutamate Racemase Inhibition

Kim, E.E.

(2007) J Mol Biology 372: 434-443

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptococcus pyogenes M1 GAS
Macromolecule	Glutamate Racemase (protein)
Unique Ligands	NHL

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2RKB \| pdb_00002rkb	Download File View File

Serine dehydratase like-1 from human cancer cells

Yamada, T., Komoto, J., Kasuya, T., Mori, H., Ogawa, H., Takusagawa, F.

(2008) Biochim Biophys Acta 1780: 809-818

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Serine dehydratase-like (protein)
Unique Ligands	K, PLP

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2VVT \| pdb_00002vvt	Download File View File

Glutamate Racemase (MurI) from E. faecalis in complex with a 9-Benzyl Purine inhibitor

Geng, B., Breault, G., Comita-Prevoir, J., Petrichko, R., Eyermann, C., Lundqvist, T., Doig, P., Gorseth, E., Noonan, B.

(2008) Bioorg Med Chem Lett 18: 4368

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Enterococcus faecalis
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL, I24

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2W4I \| pdb_00002w4i	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate and an inhibitor

Lundqvist, T.

(2009) Bioorg Med Chem Lett 19: 930-936

Released	2008-12-09
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Helicobacter pylori
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL, VGA

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3HFR \| pdb_00003hfr	Download File View File

Crystal structure of glutamate racemase from Listeria monocytogenes

Majorek, K.A., Chruszcz, M., Zimmerman, M.D., Klimecka, M.M., Cymborowski, M., Skarina, T., Onopriyenko, O., Stam, J., Otwinowski, Z., Anderson, W.F., Savchenko, A., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Listeria monocytogenes
Macromolecule	Glutamate racemase (protein)
Unique Ligands	CL, JEF

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3IST \| pdb_00003ist	Download File View File

Crystal structure of glutamate racemase from Listeria monocytogenes in complex with succinic acid

Majorek, K.A., Chruszcz, M., Skarina, T., Onopriyenko, O., Stam, J., Anderson, W.F., Savchenko, A., Bujnicki, J.M., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Listeria monocytogenes EGD-e
Macromolecule	Glutamate racemase (protein)
Unique Ligands	CL, SIN

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3ISV \| pdb_00003isv	Download File View File

Crystal structure of glutamate racemase from Listeria monocytogenes in complex with acetate ion

Majorek, K.A., Chruszcz, M., Skarina, T., Onopriyenko, O., Stam, J., Anderson, W.F., Savchenko, A., Bujnicki, J.M., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Listeria monocytogenes EGD-e
Macromolecule	Glutamate racemase (protein)
Unique Ligands	ACT, CA, CL

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3OUT \| pdb_00003out	Download File View File

Crystal structure of glutamate racemase from Francisella tularensis subsp. tularensis SCHU S4 in complex with D-glutamate.

Filippova, E.V., Wawrzak, Z., Onopriyenko, O., Kudriska, M., Edwards, A., Savchenko, A., Anderson, F.W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Francisella tularensis subsp. tularensis
Macromolecule	Glutamate racemase (protein)
Unique Ligands	DGL

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1B73 | pdb_00001b73

1B74 | pdb_00001b74

1ZUW | pdb_00001zuw

2DWU | pdb_00002dwu

2GZM | pdb_00002gzm

2JFN | pdb_00002jfn

2JFO | pdb_00002jfo

2JFP | pdb_00002jfp

2JFQ | pdb_00002jfq

2JFU | pdb_00002jfu

2JFV | pdb_00002jfv

2JFW | pdb_00002jfw

2JFX | pdb_00002jfx

2JFY | pdb_00002jfy

2JFZ | pdb_00002jfz

2OHG | pdb_00002ohg

2OHO | pdb_00002oho

2OHV | pdb_00002ohv

2RKB | pdb_00002rkb

2VVT | pdb_00002vvt

2W4I | pdb_00002w4i

3HFR | pdb_00003hfr

3IST | pdb_00003ist

3ISV | pdb_00003isv

3OUT | pdb_00003out