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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "0U"

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Thermus thermophilus (18)
	synthetic construct (4)
	Mus musculus (2)
	Homo sapiens (1)

Taxonomy

	Bacteria (18)
	other sequences (4)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (28)

Polymer Entity Type

	RNA (26)
	Protein (3)
	DNA (1)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (16)
	2.0 - 2.5 (5)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (6)
	2015 - 2019 (3)
	2020 - 2024 (18)

Symmetry Type

Asymmetric (3)

AllSelected

1 to 25 of 28 Structures

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1R3O \| pdb_00001r3o	Download File View File

Crystal structure of the first RNA duplex in L-conformation at 1.9A resolution

Vallazza, M., Perbandt, M., Klussmann, S., Rypniewski, W., Erdmann, V.A., Betzel, C.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1-7

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	L-RNA (nucleic acid)

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2G32 \| pdb_00002g32	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-05-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2GPM \| pdb_00002gpm	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA

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2GQ4 \| pdb_00002gq4	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.35 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2GQ5 \| pdb_00002gq5	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2GQ6 \| pdb_00002gq6	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2GQ7 \| pdb_00002gq7	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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4R8I \| pdb_00004r8i	Download File View File

High Resolution Structure of a Mirror-Image RNA Oligonucleotide Aptamer in Complex with the Chemokine CCL2

Oberthuer, D., Achenbach, J., Gabdulkhakov, A., Falke, S., Buchner, K., Maasch, C., Rehders, D., Klussmann, S., Betzel, C.

(2015) Nat Commun 6: 6923-6923

Released	2015-04-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	C-C motif chemokine 2 (protein) Mirror-Image RNA Oligonucleotide Aptamer NOXE36 (nucleic acid)
Unique Ligands	K, NA, SR

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4WB2 \| pdb_00004wb2	Download File View File

Crystal structure of the mirror-image L-RNA/L-DNA aptamer NOX-D20 in complex with mouse C5a complement anaphylatoxin

Yatime, L., Maasch, C., Hoehlig, K., Klussmann, S., Vater, A., Andersen, G.R.

(2015) Nat Commun 6: 6481-6481

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Complement C5 (protein) mixed L-RNA/L-DNA mirror-image aptamer NOX-D20 (40-MER) (nucleic acid)
Unique Ligands	ACT, CA, MG

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4WB3 \| pdb_00004wb3	Download File View File

Crystal structure of the mirror-image L-RNA/L-DNA aptamer NOX-D20 in complex with mouse C5a-desArg complement anaphylatoxin

Yatime, L., Maasch, C., Hoehlig, K., Klussmann, S., Vater, A., Andersen, G.R.

(2015) Nat Commun 6: 6481-6481

Released	2015-05-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Complement C5 (protein) mixed L-RNA/L-DNA aptamer NOX-D20 (40-MER) (hybrid)
Unique Ligands	ACT, CA, MG

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6ZPF \| pdb_00006zpf	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.442 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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6ZQ9 \| pdb_00006zq9	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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6ZR1 \| pdb_00006zr1	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.528 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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6ZRL \| pdb_00006zrl	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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6ZRS \| pdb_00006zrs	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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6ZW3 \| pdb_00006zw3	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.522 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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6ZWU \| pdb_00006zwu	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.527 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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6ZX5 \| pdb_00006zx5	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.523 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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6ZX8 \| pdb_00006zx8	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.981 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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7A9L \| pdb_00007a9l	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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7A9N \| pdb_00007a9n	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.602 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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7A9O \| pdb_00007a9o	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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7A9P \| pdb_00007a9p	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.985 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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7A9Q \| pdb_00007a9q	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 2.185 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

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7A9R \| pdb_00007a9r	Download File View File

Racemic compound of RNA duplexes.

Rypniewski, W.

(2021) Nucleic Acids Res 49: 12535-12539

Released	2021-05-26
Method	X-RAY DIFFRACTION 2.455 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R(CPCPGPCPCPUPGPG)-3') (nucleic acid) RNA (5'-R(CPUPGPGPGPCPGPG)-3') (nucleic acid)
Unique Ligands	ZN

1 to 25 of 28 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

1R3O | pdb_00001r3o

2G32 | pdb_00002g32

2GPM | pdb_00002gpm

2GQ4 | pdb_00002gq4

2GQ5 | pdb_00002gq5

2GQ6 | pdb_00002gq6

2GQ7 | pdb_00002gq7

4R8I | pdb_00004r8i

4WB2 | pdb_00004wb2

4WB3 | pdb_00004wb3

6ZPF | pdb_00006zpf

6ZQ9 | pdb_00006zq9

6ZR1 | pdb_00006zr1

6ZRL | pdb_00006zrl

6ZRS | pdb_00006zrs

6ZW3 | pdb_00006zw3

6ZWU | pdb_00006zwu

6ZX5 | pdb_00006zx5

6ZX8 | pdb_00006zx8

7A9L | pdb_00007a9l

7A9N | pdb_00007a9n

7A9O | pdb_00007a9o

7A9P | pdb_00007a9p

7A9Q | pdb_00007a9q

7A9R | pdb_00007a9r