RCSB PDB: Search

1AW8 \| pdb_00001aw8	Download File View File

PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE

Albert, A., Dhanaraj, V., Genschel, U., Khan, G., Ramjee, M.K., Pulido, R., Sybanda, B.L., von Delf, F., Witty, M., Blundell, T.L., Smith, A.G., Abell, C.

(1998) Nat Struct Biol 5: 289-293

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	L-ASPARTATE-ALPHA-DECARBOXYLASE (protein)

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1HQ6 \| pdb_00001hq6	Download File View File

STRUCTURE OF PYRUVOYL-DEPENDENT HISTIDINE DECARBOXYLASE AT PH 8

Schelp, E., Worley, S., Monzingo, A.F., Ernst, S., Robertus, J.D.

(2001) J Mol Biology 306: 727-732

Released	2001-03-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Lactobacillus sp. 30A
Macromolecule	HISTIDINE DECARBOXYLASE (protein)

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1I72 \| pdb_00001i72	Download File View File

HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE WITH COVALENTLY BOUND PYRUVOYL GROUP AND COVALENTLY BOUND 5'-DEOXY-5'-[N-METHYL-N-(2-AMINOOXYETHYL) AMINO]ADENOSINE

Tolbert, W.D., Ekstrom, J.L., Mathews, I.I., Secrist III, J.A., Pegg, A.E., Ealick, S.E.

(2001) Biochemistry 40: 9484-9494

Released	2001-08-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN (protein) S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN (protein)
Unique Ligands	MAO, PUT

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1I79 \| pdb_00001i79	Download File View File

HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE WITH COVALENTLY BOUND PYRUVOYL GROUP AND COVALENTLY BOUND 5'-DEOXY-5'-[(3-HYDRAZINOPROPYL)METHYLAMINO]ADENOSINE

Tolbert, W.D., Ekstrom, J.L., Mathews, I.I., Secrist III, J.A., Pegg, A.E., Ealick, S.E.

(2001) Biochemistry 40: 9484-9494

Released	2001-08-22
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN (protein) S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN (protein)
Unique Ligands	MHZ, PUT

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1I7B \| pdb_00001i7b	Download File View File

HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE WITH COVALENTLY BOUND PYRUVOYL GROUP AND COVALENTLY BOUND S-ADENOSYLMETHIONINE METHYL ESTER

Tolbert, W.D., Ekstrom, J.L., Mathews, I.I., Secrist III, J.A., Pegg, A.E., Ealick, S.E.

(2001) Biochemistry 40: 9484-9494

Released	2001-08-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN (protein) S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN (protein)
Unique Ligands	PUT, SMM

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1I7C \| pdb_00001i7c	Download File View File

HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE WITH COVALENTLY BOUND PYRUVOYL GROUP AND COMPLEXED WITH METHYLGLYOXAL BIS-(GUANYLHYDRAZONE)

Tolbert, W.D., Ekstrom, J.L., Mathews, I.I., Secrist III, J.A., Pegg, A.E., Ealick, S.E.

(2001) Biochemistry 40: 9484-9494

Released	2001-08-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN (protein) S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN (protein)
Unique Ligands	MGB, PUT

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1I7M \| pdb_00001i7m	Download File View File

HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE WITH COVALENTLY BOUND PYRUVOYL GROUP AND COMPLEXED WITH 4-AMIDINOINDAN-1-ONE-2'-AMIDINOHYDRAZONE

Tolbert, W.D., Ekstrom, J.L., Mathews, I.I., Secrist III, J.A., Pegg, A.E., Ealick, S.E.

(2001) Biochemistry 40: 9484-9494

Released	2001-08-22
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN (protein) S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN (protein)
Unique Ligands	CG, PUT

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1IBT \| pdb_00001ibt	Download File View File

STRUCTURE OF THE D53,54N MUTANT OF HISTIDINE DECARBOXYLASE AT-170 C

Worley, S., Schelp, E., Monzingo, A.F., Ernst, S., Robertus, J.D.

(2002) Proteins 46: 321-329

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lactobacillus sp. 30A
Macromolecule	HISTIDINE DECARBOXYLASE ALPHA CHAIN (protein) HISTIDINE DECARBOXYLASE BETA CHAIN (protein)

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1IBU \| pdb_00001ibu	Download File View File

STRUCTURE OF THE D53,54N MUTANT OF HISTIDINE DECARBOXYLASE AT 25 C

Worley, S., Schelp, E., Monzingo, A.F., Ernst, S., Robertus, J.D.

(2002) Proteins 46: 321-329

Released	2002-03-13
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Lactobacillus sp. 30A
Macromolecule	HISTIDINE DECARBOXYLASE ALPHA CHAIN (protein) HISTIDINE DECARBOXYLASE BETA CHAIN (protein)

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1IBV \| pdb_00001ibv	Download File View File

STRUCTURE OF THE D53,54N MUTANT OF HISTIDINE DECARBOXYLASE BOUND WITH HISTIDINE METHYL ESTER AT-170 C

Worley, S., Schelp, E., Monzingo, A.F., Ernst, S., Robertus, J.D.

(2002) Proteins 46: 321-329

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactobacillus sp. 30A
Macromolecule	HISTIDINE DECARBOXYLASE BETA CHAIN (protein) Histidine decarboxylase alpha chain (protein)
Unique Ligands	PVH

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1IBW \| pdb_00001ibw	Download File View File

STRUCTURE OF THE D53,54N MUTANT OF HISTIDINE DECARBOXYLASE BOUND WITH HISTIDINE METHYL ESTER AT 25 C

Worley, S., Schelp, E., Monzingo, A.F., Ernst, S., Robertus, J.D.

(2002) Proteins 46: 321-329

Released	2002-03-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Lactobacillus sp. 30A
Macromolecule	HISTIDINE DECARBOXYLASE BETA CHAIN (protein) Histidine decarboxylase alpha chain (protein)
Unique Ligands	PVH

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1JEN \| pdb_00001jen	Download File View File

HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE

Ekstrom, J.L., Mathews, I.I., Stanley, B.A., Pegg, A.E., Ealick, S.E.

(1999) Structure 7: 583-595

Released	1999-06-01
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (S-ADENOSYLMETHIONINE DECARBOXYLASE (ALPHA CHAIN)) (protein) PROTEIN (S-ADENOSYLMETHIONINE DECARBOXYLASE (BETA CHAIN)) (protein)

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1MHM \| pdb_00001mhm	Download File View File

Crystal structure of S-adenosylmethionine decarboxylase from potato

Bennett, E.M., Ekstrom, J.L., Pegg, A.E., Ealick, S.E.

(2002) Biochemistry 41: 14509-14517

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Solanum tuberosum
Macromolecule	S-adenosylmethionine decarboxylase (protein)

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1MT1 \| pdb_00001mt1	Download File View File

The Crystal Structure of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannaschii

Tolbert, W.D., Graham, D.E., White, R.H., Ealick, S.E.

(2003) Structure 11: 285-294

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN (protein) PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN (protein)
Unique Ligands	AG2

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1N13 \| pdb_00001n13	Download File View File

The Crystal Structure of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannashii

Tolbert, W.D., Graham, D.E., White, R.H., Ealick, S.E.

(2003) Structure 11: 285-294

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Pyruvoyl-dependent arginine decarboxylase alpha chain (protein) Pyruvoyl-dependent arginine decarboxylase beta chain (protein)
Unique Ligands	AG2, MRD

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1PYA \| pdb_00001pya	Download File View File

REFINED STRUCTURE OF THE PYRUVOYL-DEPENDENT HISTIDINE DECARBOXYLASE FROM LACTOBACILLUS 30A

Gallagher, T., Rozwarski, D.A., Ernst, S.R., Hackert, M.L.

(1993) J Mol Biology 230: 516-528

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactobacillus sp. 30A
Macromolecule	PYRUVOYL-DEPENDENT HISTIDINE DECARBOXYLASE (L-HISTIDINE CARBOXYLASE) (protein)

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1UHD \| pdb_00001uhd	Download File View File

Crystal structure of aspartate decarboxylase, pyruvoly group bound form

Lee, B.I., Kwon, A.-R., Han, B.W., Suh, S.W.

(2004) J Mol Biology 340: 1-7

Released	2004-07-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Helicobacter pylori
Macromolecule	Aspartate 1-decarboxylase alpha chain (protein) Aspartate 1-decarboxylase beta chain (protein)

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1VC3 \| pdb_00001vc3	Download File View File

Crystal Structure of L-Aspartate-alpha-Decarboxylase

Nakajima, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus
Macromolecule	L-Aspartate-alpha-Decarboxylase heavy chain (protein) L-Aspartate-alpha-Decarboxylase light chain (protein)

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2QQC \| pdb_00002qqc	Download File View File

E109Q mutant of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannashii

Ealick, S.E., Soriano, E.S.

(2008) Acta Crystallogr D Biol Crystallogr 64: 377-382

Released	2008-03-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Pyruvoyl-dependent arginine decarboxylase subunit alpha (protein) Pyruvoyl-dependent arginine decarboxylase subunit beta (protein)
Unique Ligands	AG2, MPD

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3BP2 \| pdb_00003bp2	Download File View File

ROLE OF THE N-TERMINUS IN THE INTERACTION OF PANCREATIC PHOSPHOLIPASE A2 WITH AGGREGATED SUBSTRATES. PROPERTIES AND CRYSTAL STRUCTURE OF TRANSAMINATED PHOSPHOLIPASE A2

Dijkstra, B.W., Drenth, J.

(1984) Biochemistry 23: 2759-2766

Released	1983-09-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA

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3DZ2 \| pdb_00003dz2	Download File View File

Human AdoMetDC with 5'-[(3-aminopropyl)methylamino]-5'deoxy-8-methyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	A8M, PUT

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3DZ3 \| pdb_00003dz3	Download File View File

Human AdoMetDC F223A mutant with covalently bound S-Adenosylmethionine methyl ester

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PUT, SMM

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3DZ4 \| pdb_00003dz4	Download File View File

Human AdoMetDC with 5'-[(2-carboxamidoethyl)methylamino]-5'-deoxy-8-methyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	C8M, PUT

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3DZ5 \| pdb_00003dz5	Download File View File

Human AdoMetDC with covalently bound 5'-[(2-aminooxyethyl)methylamino]-5'-deoxy-8-methyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	M8M, PUT

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3DZ6 \| pdb_00003dz6	Download File View File

Human AdoMetDC with 5'-[(4-aminooxybutyl)methylamino]-5'deoxy-8-ethyladenosine

Bale, S., McCloskey, D.E., Pegg, A.E., Secrist III, J.A., Guida, W.C., Ealick, S.E.

(2009) J Med Chem 52: 1388-1407

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	M8E, PUT

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AW8 | pdb_00001aw8

1HQ6 | pdb_00001hq6

1I72 | pdb_00001i72

1I79 | pdb_00001i79

1I7B | pdb_00001i7b

1I7C | pdb_00001i7c

1I7M | pdb_00001i7m

1IBT | pdb_00001ibt

1IBU | pdb_00001ibu

1IBV | pdb_00001ibv

1IBW | pdb_00001ibw

1JEN | pdb_00001jen

1MHM | pdb_00001mhm

1MT1 | pdb_00001mt1

1N13 | pdb_00001n13

1PYA | pdb_00001pya

1UHD | pdb_00001uhd

1VC3 | pdb_00001vc3

2QQC | pdb_00002qqc

3BP2 | pdb_00003bp2

3DZ2 | pdb_00003dz2

3DZ3 | pdb_00003dz3

3DZ4 | pdb_00003dz4

3DZ5 | pdb_00003dz5

3DZ6 | pdb_00003dz6