RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: PubMed ID = 18187656

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 304 Structures.

Refinements

Structure Determination Methodology

experimental (304)

Scientific Name of Source Organism

	Homo sapiens (46)
	synthetic construct (17)
	Severe acute respiratory syndrome coronavirus 2 (16)
	Carboxydothermus hydrogenoformans Z-2901 (13)
	Escherichia coli K-12 (12)
	Bacillus subtilis subsp. subtilis str. 168 (10)
	Escherichia coli (10)
	Sulfurisphaera tokodaii str. 7 (10)
	Nakaseomyces glabratus CBS 138 (9)
	Mycolicibacterium smegmatis MC2 155 (8)

More...

Taxonomy

	Bacteria (148)
	Eukaryota (100)
	Riboviria (30)
	Archaea (19)
	other sequences (17)
	Duplodnaviria (10)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (280)
	ELECTRON MICROSCOPY (21)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (304)
	DNA (9)
	RNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (4)
	1.0 - 1.5 (46)
	1.5 - 2.0 (79)
	2.0 - 2.5 (74)
	2.5 - 3.0 (51)
	3.0 - 3.5 (31)
	3.5 - 4.0 (10)
	4.0 - 4.5 (1)
	> 4.5 (5)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (3)
	2005 - 2009 (2)
	2010 - 2014 (51)
	2015 - 2019 (50)
	2020 - 2024 (175)
	2025 - 2029 (21)

Enzyme Classification Name

	Hydrolases (68)
	Transferases (33)
	Oxidoreductases (28)
	Lyases (7)
	Translocases (5)
	Isomerases (8)
	Ligases (2)

Membrane Protein Annotation

	mpstruc (9)
	PDBTM (3)
	MemProtMD (2)
	OPM (1)

Symmetry Type

	Asymmetric (153)
	Cyclic (138)
	Dihedral (15)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (17)
	Artifacts (9)
	All beta proteins (4)
	All alpha proteins (4)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (1)
	Alpha and beta proteins (a/b) (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 304 Structures

Page 1 of 13

Sort by

Explore in 3D

1AWZ \| pdb_00001awz	Download File View File

3D SOLUTION STRUCTURE OF HUMAN ANGIOGENIN DETERMINED BY 1H, 15N NMR SPECTROSCOPY, 30 STRUCTURES

Lequin, O., Thuring, H., Robin, M., Lallemand, J.-Y.

(1997) Eur J Biochem 250: 712-726

Released	1998-02-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)

Explore in 3D

1BT9 \| pdb_00001bt9	Download File View File

OMPF PORIN MUTANT D74A

Philippsen, A., Schirmer, T.

(1998) Biochemistry 37: 15663-15670

Released	1999-01-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli B
Macromolecule	PROTEIN (MATRIX PORIN OUTER MEMBRANE PROTEIN F) (protein)

Explore in 3D

1H80 \| pdb_00001h80	Download File View File

1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE- 3,6-ANHYDRO-D-GALACTOSE-2-SULFATE 4 GALACTOHYDROLASE

Michel, G., Chantalat, L., Dideberg, O.

(2001) J Biological Chem 276: 40202

Released	2001-11-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Alteromonas macleodii
Macromolecule	IOTA-CARRAGEENASE (protein)
Unique Ligands	CA, CL, GOL, NA

Explore in 3D

1IDT \| pdb_00001idt	Download File View File

STRUCTURAL STUDIES ON A PRODRUG-ACTIVATING SYSTEM-CB1954 AND FMN-DEPENDENT NITROREDUCTASE

Johansson, E., Parkinson, G.N., Denny, W.A., Neidle, S.

(2003) J Med Chem 46: 4009-4020

Released	2003-09-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	MINOR FMN-DEPENDENT NITROREDUCTASE (protein)
Unique Ligands	CB1, FMN

Explore in 3D

1OK9 \| pdb_00001ok9	Download File View File

Decay accelerating factor (CD55): The structure of an intact human complement regulator.

Lukacik, P., Roversi, P., White, J., Esser, D., Smith, G.P., Billington, J., Williams, P.A., Rudd, P.M., Wormald, M.R., Crispin, M.D.M., Radcliffe, C.M., Dwek, R.A., Evans, D.J., Morgan, B.P., Smith, R.A.G., Lea, S.M.

(2004) Proc Natl Acad Sci U S A 101: 1279

Released	2004-01-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	COMPLEMENT DECAY-ACCELERATING FACTOR (protein)
Unique Ligands	ACT, CL, GOL, PT, SO4

Explore in 3D

2CMU \| pdb_00002cmu	Download File View File

Crystal structure of a putative peptidyl-arginine deiminase

Rajashankar, K.R., Kniewel, R., Solorzano, V., Lima, C.D., New York Structural GenomiX Research Consortium (NYSGXRC)

To be published

Released	2006-05-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Helicobacter pylori 26695
Macromolecule	PUTATIVE PEPTIDYL-ARGININE DEIMINASE (protein)

Explore in 3D

2UYG \| pdb_00002uyg	Download File View File

Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus

Utsunomiya, H., Agari, Y., Imagawa, T., Tsuge, H.

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	3-DEHYDROQUINATE DEHYDRATASE (protein)
Unique Ligands	GOL

Explore in 3D

2WTU \| pdb_00002wtu	Download File View File

Crystal structure of Escherichia coli MutS in complex with a 16 basepair oligo containing an A.A mismatch.

Natrajan, G., Lebbink, J.H., Reumer, A., Fish, A., Winterwerp, H.H., Sixma, T.K.

(2010) J Biological Chem 285: 13131-13141

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	DNA MISMATCH REPAIR PROTEIN MUTS (protein) DNA (nucleic acid)
Unique Ligands	ADP, CL

Explore in 3D

2YOC \| pdb_00002yoc	Download File View File

Crystal structure of PulA from Klebsiella oxytoca

Francetic, O., Mechaly, A.E., Tello-Manigne, D., Buschiazzo, A., Bernarde, C., Nadeau, N., Pugsley, A.P., Alzari, P.M.

(2016) Structure 24: 92

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Klebsiella oxytoca
Macromolecule	PULLULANASE (protein)
Unique Ligands	CA, SO4

Explore in 3D

3ZC4 \| pdb_00003zc4	Download File View File

The structure of Csa5 from Sulfolobus solfataricus.

Reeks, J., Anderson, L., White, M.F., Naismith, J.H.

(2013) RNA Biol 10: 762

Released	2013-02-20
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Saccharolobus solfataricus
Macromolecule	SSO1398 (protein)
Unique Ligands	PEG

Explore in 3D

3ZED \| pdb_00003zed	Download File View File

X-ray structure of the birnavirus VP1-VP3 complex

Bahar, M.W., Sarin, L.P., Graham, S.C., Pang, J., Bamford, D.H., Stuart, D.I., Grimes, J.M.

(2013) J Virol 87: 3229

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Infectious pancreatic necrosis virus
Macromolecule	CAPSID PROTEIN VP3 (protein) RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	GOL, K

Explore in 3D

3ZFV \| pdb_00003zfv	Download File View File

Crystal structure of an archaeal CRISPR-associated Cas6 nuclease

Reeks, J., Liu, H., White, M.F., Naismith, J.H.

(2013) Biochem J 452: 223

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	CRISPR-ASSOCIATED ENDORIBONUCLEASE CAS6 1 (protein)
Unique Ligands	GOL

Explore in 3D

3ZLJ \| pdb_00003zlj	Download File View File

CRYSTAL STRUCTURE OF FULL-LENGTH E.COLI DNA MISMATCH REPAIR PROTEIN MUTS D835R MUTANT IN COMPLEX WITH GT MISMATCHED DNA

Groothuizen, F.S., Fish, A., Petoukhov, M.V., Reumer, A., Manelyte, L., Winterwerp, H.H.K., Marinus, M.G., Lebbink, J.H.G., Svergun, D.I., Friedhoff, P., Sixma, T.K.

(2013) Nucleic Acids Res 41: 8166

Released	2013-07-17
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DNA MISMATCH REPAIR PROTEIN MUTS (protein) 5'-D(APGPCPTPGPCPCPAPGPGPCPAPCPCP APGPTPGPTPCPAP)-3' (nucleic acid) 5'-D(TPGPAPCPAPCPTPGPGPTPGPCPTPTP GPGPCPAPGPCPTP)-3' (nucleic acid)

Explore in 3D

3ZPJ \| pdb_00003zpj	Download File View File

Crystal structure of Ton1535 from Thermococcus onnurineus NA1

Jeong, J.H., kim, Y.G.

(2014) Proteins 82: 1072

Released	2013-12-04
Method	X-RAY DIFFRACTION 2.304 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	TON_1535 (protein)

Explore in 3D

3ZT9 \| pdb_00003zt9	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Moorella thermoacetica
Macromolecule	SERINE PHOSPHATASE (protein)
Unique Ligands	MN, PEG

Explore in 3D

3ZTA \| pdb_00003zta	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Moorella thermoacetica
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN (protein)

Explore in 3D

3ZTB \| pdb_00003ztb	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Moorella thermoacetica
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN (protein)
Unique Ligands	IOD

Explore in 3D

4AF9 \| pdb_00004af9	Download File View File

Crystal Structure of Epithelial Adhesin 1 A domain (Epa1A) from Candida glabrata in complex with Galb1-3Glc

Maestre-Reyna, M., Diderrich, R., Veelders, M.S., Eulenburg, G., Kalugin, V., Brueckner, S., Keller, P., Rupp, S., Moesch, H.-U., Essen, L.-O.

(2012) Proc Natl Acad Sci U S A 109: 16864

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Nakaseomyces glabratus
Macromolecule	EPA1P (protein)
Unique Ligands	CA, GOL, PEG
Unique branched monosaccharides	BGC, GAL, GLC

Explore in 3D

4AGS \| pdb_00004ags	Download File View File

Leishmania TDR1 - a unique trimeric glutathione transferase

Fyfe, P.K., Westrop, G.D., Silva, A.M., Coombs, G.H., Hunter, W.N.

(2012) Proc Natl Acad Sci U S A 109: 11693

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Leishmania infantum
Macromolecule	THIOL-DEPENDENT REDUCTASE 1 (protein)
Unique Ligands	EDO, GSH

Explore in 3D

4AM6 \| pdb_00004am6	Download File View File

C-TERMINAL DOMAIN OF ACTIN-RELATED PROTEIN ARP8 FROM S. CEREVISIAE

Wuerges, J., Saravanan, M., Bose, D., Cook, N.J., Zhang, X., Wigley, D.B.

(2012) Proc Natl Acad Sci U S A 109: 20883

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ACTIN-LIKE PROTEIN ARP8 (protein)
Unique Ligands	SO4

Explore in 3D

4AM7 \| pdb_00004am7	Download File View File

ADP-BOUND C-TERMINAL DOMAIN OF ACTIN-RELATED PROTEIN ARP8 FROM S. CEREVISIAE

Wuerges, J., Saravanan, M., Bose, D., Cook, N.J., Zhang, X., Wigley, D.B.

(2012) Proc Natl Acad Sci U S A 109: 20883

Released	2012-12-12
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ACTIN-LIKE PROTEIN ARP8 (protein)
Unique Ligands	ADP

Explore in 3D

4AUD \| pdb_00004aud	Download File View File

Crystal structure of alternaria alternata major allergen alt a 1

Mechaly, A.E., Ibanez de Opakua, A., Asturias, J., Viguera, A.R.

To be published

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Alternaria alternata
Macromolecule	MAJOR ALLERGEN ALT A 1 SUBUNIT (protein)
Unique Ligands	SO4

Explore in 3D

4AXI \| pdb_00004axi	Download File View File

Structure of the Clostridium difficile EutS protein

Pitts, A.C., Tuck, L.R., Faulds-Pain, A., Lewis, R.J., Marles-Wright, J.

(2012) PLoS One 7: 48360

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Clostridioides difficile 630
Macromolecule	ETHANOLAMINE CARBOXYSOME STRUCTURAL PROTEIN (protein)
Unique Ligands	GOL

Explore in 3D

4AXJ \| pdb_00004axj	Download File View File

Structure of the Clostridium difficile EutM protein

Pitts, A.C., Tuck, L.R., Faulds-Pain, A., Lewis, R.J., Marles-Wright, J.

(2012) PLoS One 7: 48360

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Clostridioides difficile 630
Macromolecule	ETHANOLAMINE CARBOXYSOME STRUCTURAL PROTEIN (protein)
Unique Ligands	SO4

Explore in 3D

4AXO \| pdb_00004axo	Download File View File

Structure of the Clostridium difficile EutQ protein

Pitts, A.C., Tuck, L.R., Faulds-Pain, A., Lewis, R.J., Marles-Wright, J.

(2012) PLoS One 7: 48360

Released	2012-06-27
Method	X-RAY DIFFRACTION 1 Å
Organisms	Clostridioides difficile 630
Macromolecule	ETHANOLAMINE UTILIZATION PROTEIN (protein)
Unique Ligands	MG

1 to 25 of 304 Structures

Page 1 of 13

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AWZ | pdb_00001awz

1BT9 | pdb_00001bt9

1H80 | pdb_00001h80

1IDT | pdb_00001idt

1OK9 | pdb_00001ok9

2CMU | pdb_00002cmu

2UYG | pdb_00002uyg

2WTU | pdb_00002wtu

2YOC | pdb_00002yoc

3ZC4 | pdb_00003zc4

3ZED | pdb_00003zed

3ZFV | pdb_00003zfv

3ZLJ | pdb_00003zlj

3ZPJ | pdb_00003zpj

3ZT9 | pdb_00003zt9

3ZTA | pdb_00003zta

3ZTB | pdb_00003ztb

4AF9 | pdb_00004af9

4AGS | pdb_00004ags

4AM6 | pdb_00004am6

4AM7 | pdb_00004am7

4AUD | pdb_00004aud

4AXI | pdb_00004axi

4AXJ | pdb_00004axj

4AXO | pdb_00004axo