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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 37828292

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Escherichia coli (3)
	Homo sapiens (2)
	Pseudomonas sp. KKS102 (2)
	Bos taurus (1)
	Cyanothece sp. PCC 7425 (1)
	Escherichia coli K-12 (1)
	Klebsiella pneumoniae (1)
	Leptospira interrogans serovar Copenhageni (1)
	Mammarenavirus whitewaterense (1)
	Pseudomonas aeruginosa (1)

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Taxonomy

	Bacteria (13)
	Eukaryota (4)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

2020 - 2024 (17)

Enzyme Classification Name

	Isomerases (1)
	Lyases (1)
	Oxidoreductases (1)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (6)
	mpstruc (6)
	MemProtMD (4)

Symmetry Type

	Asymmetric (10)
	Cyclic (6)
	Dihedral (1)

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1 to 17 of 17 Structures

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8PWN \| pdb_00008pwn	Download File View File

Structure of A2A adenosine receptor A2AR-StaR2-bRIL, solved at wavelength 2.75 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Romano, M., Moraes, I., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562 (protein)
Unique Ligands	CLR, OLA, TEP

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8PX0 \| pdb_00008px0	Download File View File

Structure of ribonuclease A, solved at wavelength 2.75 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Romano, M., Beis, K., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease pancreatic (protein)
Unique Ligands	0U

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8PX1 \| pdb_00008px1	Download File View File

Structure of salmonella effector SseK3, solved at wavelength 2.75 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C.M., Esposito, D., Rittinger, K., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Non-LEE encoded effector protein NleB (protein)

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8PX4 \| pdb_00008px4	Download File View File

Structure of the PAS domain code by the LIC_11128 gene from Leptospira interrogans serovar Copenhageni Fiocruz, solved at wavelength 3.09 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Guzzo, C.R., Owens, R.J., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Leptospira interrogans serovar Copenhageni
Macromolecule	Diguanylate cyclase (protein)

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8PX5 \| pdb_00008px5	Download File View File

Structure of the RNA recognition motif (RRM) of Seb1 from S. pombe., solved at wavelength 2.75 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Wittmann, S., Renner, M., Grimes, J.M., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Rpb7-binding protein seb1 (protein)

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8PX7 \| pdb_00008px7	Download File View File

Structure of Bacterial Multidrug Efflux transporter AcrB, solved at wavelength 3.02 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Qu, F., Beis, K., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia coli K-12
Macromolecule	Multidrug efflux pump subunit AcrB (protein)

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8PX9 \| pdb_00008px9	Download File View File

Structure of the antibacterial peptide ABC transporter McjD, solved at wavelength 2.75 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Bountra, K., Beis, K., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Microcin-J25 export ATP-binding/permease protein McjD (protein)
Unique Ligands	ANP, MG

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8PXC \| pdb_00008pxc	Download File View File

Structure of Fap1, a domain of the accessory Sec-dependent serine-rich glycoprotein adhesin from Streptococcus oralis, solved at wavelength 3.06 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Owen, C.D., Walsh, M.A., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.973 Å
Organisms	Streptococcus oralis
Macromolecule	Fap1 (protein)
Unique Ligands	CA, EDO

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8PXG \| pdb_00008pxg	Download File View File

Structure of Streptactin, solved at wavelength 2.75 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Vecchia, L., Jones, E.Y., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	CL, GOL

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8PXH \| pdb_00008pxh	Download File View File

Structure of TauA from E. coli, solved at wavelength 2.375 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Qu, F., Beis, K., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Escherichia coli
Macromolecule	Taurine ABC transporter substrate-binding protein (protein)
Unique Ligands	IOD, TAU

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8PXJ \| pdb_00008pxj	Download File View File

Structure of Whitewater Arroyo virus GP1 glycoprotein, solved at wavelength 2.75 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Bowden, T.A., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Mammarenavirus whitewaterense
Macromolecule	Glycoprotein G1 (protein)
Unique Ligands	CD, NAG, SO4

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8PXK \| pdb_00008pxk	Download File View File

Structure of NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4, solved at wavelength 5.76 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Senda, M., Matsugaki, N., Kawano, Y., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 3.77 Å
Organisms	Pseudomonas sp. KKS102
Macromolecule	Ferredoxin reductase (protein)
Unique Ligands	FAD

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8PXL \| pdb_00008pxl	Download File View File

Structure of NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4, solved at wavelength 1.37 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Senda, M., Matsugaki, N., Kawano, Y., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pseudomonas sp. KKS102
Macromolecule	Ferredoxin reductase (protein)
Unique Ligands	FAD, FMT, GOL

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8PYV \| pdb_00008pyv	Download File View File

Structure of Human PS-1 GSH-analog complex, solved at wavelength 2.755 A

Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Wagner, A., Vogeley, L., Brown, D.G.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Prostaglandin E synthase (protein)
Unique Ligands	48T, PLM

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8PYZ \| pdb_00008pyz	Download File View File

Structure of Ompk36GD from Klebsiella pneumonia, solved at wavelength 4.13 A

Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Kwong, H., Beis, K., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Klebsiella pneumoniae
Macromolecule	OmpK36 (protein)
Unique Ligands	C8E, LDA

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8PZ4 \| pdb_00008pz4	Download File View File

Structure of alginate transporter, AlgE, solved at wavelength 2.755 A

Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Wagner, A., Vogeley, L., Brown, D.G.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Alginate production protein AlgE (protein)
Unique Ligands	78M, 78N, CA, FLC, LDA, PE5, SO4

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8PZ5 \| pdb_00008pz5	Download File View File

Structure of ThcOx, solved at wavelength 3.099 A

Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Cyanothece sp. PCC 7425
Macromolecule	SagB-type dehydrogenase domain protein (protein)
Unique Ligands	FMN

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

8PWN | pdb_00008pwn

Structure of A2A adenosine receptor A2AR-StaR2-bRIL, solved at wavelength 2.75 A

8PX0 | pdb_00008px0

Structure of ribonuclease A, solved at wavelength 2.75 A

8PX1 | pdb_00008px1

Structure of salmonella effector SseK3, solved at wavelength 2.75 A

8PX4 | pdb_00008px4

Structure of the PAS domain code by the LIC_11128 gene from Leptospira interrogans serovar Copenhageni Fiocruz, solved at wavelength 3.09 A

8PX5 | pdb_00008px5

Structure of the RNA recognition motif (RRM) of Seb1 from S. pombe., solved at wavelength 2.75 A

8PX7 | pdb_00008px7

Structure of Bacterial Multidrug Efflux transporter AcrB, solved at wavelength 3.02 A

8PX9 | pdb_00008px9

Structure of the antibacterial peptide ABC transporter McjD, solved at wavelength 2.75 A

8PXC | pdb_00008pxc

Structure of Fap1, a domain of the accessory Sec-dependent serine-rich glycoprotein adhesin from Streptococcus oralis, solved at wavelength 3.06 A

8PXG | pdb_00008pxg

Structure of Streptactin, solved at wavelength 2.75 A

8PXH | pdb_00008pxh

Structure of TauA from E. coli, solved at wavelength 2.375 A

8PXJ | pdb_00008pxj

Structure of Whitewater Arroyo virus GP1 glycoprotein, solved at wavelength 2.75 A

8PXK | pdb_00008pxk

Structure of NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4, solved at wavelength 5.76 A

8PXL | pdb_00008pxl

Structure of NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4, solved at wavelength 1.37 A

8PYV | pdb_00008pyv

Structure of Human PS-1 GSH-analog complex, solved at wavelength 2.755 A

8PYZ | pdb_00008pyz

Structure of Ompk36GD from Klebsiella pneumonia, solved at wavelength 4.13 A

8PZ4 | pdb_00008pz4

Structure of alginate transporter, AlgE, solved at wavelength 2.755 A

8PZ5 | pdb_00008pz5

Structure of ThcOx, solved at wavelength 3.099 A

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

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8PWN | pdb_00008pwn

8PX0 | pdb_00008px0

8PX1 | pdb_00008px1

8PX4 | pdb_00008px4

8PX5 | pdb_00008px5

8PX7 | pdb_00008px7

8PX9 | pdb_00008px9

8PXC | pdb_00008pxc

8PXG | pdb_00008pxg

8PXH | pdb_00008pxh

8PXJ | pdb_00008pxj

8PXK | pdb_00008pxk

8PXL | pdb_00008pxl

8PYV | pdb_00008pyv

8PYZ | pdb_00008pyz

8PZ4 | pdb_00008pz4

8PZ5 | pdb_00008pz5