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245,074
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "APOPTOSIS"

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Search Summary

This query matches 1,018 Structures.

Refinements

Structure Determination Methodology

experimental (1,018)

Scientific Name of Source Organism

	Homo sapiens (844)
	Mus musculus (96)
	synthetic construct (44)
	Escherichia coli K-12 (21)
	Drosophila melanogaster (18)
	Caenorhabditis elegans (15)
	Rattus norvegicus (13)
	Escherichia coli (11)
	Danio rerio (10)
	Escherichia coli O157:H7 (8)

More...

Taxonomy

	Eukaryota (999)
	Bacteria (52)
	other sequences (44)
	Varidnaviria (24)
	Duplodnaviria (15)
	Riboviria (5)
	Viruses incertae sedis (5)
	Riboviria (RNA viruses and viroids) (3)

Experimental Method

	X-RAY DIFFRACTION (819)
	SOLUTION NMR (159)
	ELECTRON MICROSCOPY (40)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (1,018)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (52)
	1.5 - 2.0 (247)
	2.0 - 2.5 (286)
	2.5 - 3.0 (168)
	3.0 - 3.5 (62)
	3.5 - 4.0 (26)
	4.0 - 4.5 (12)
	> 4.5 (6)

Release Date

	1995 - 1999 (16)
	2000 - 2004 (80)
	2005 - 2009 (177)
	2010 - 2014 (238)
	2015 - 2019 (259)
	2020 - 2024 (221)
	2025 - 2029 (27)

Enzyme Classification Name

	Hydrolases (125)
	Transferases (125)
	Ligases (35)
	Oxidoreductases (11)
	Isomerases (1)

Membrane Protein Annotation

	OPM (17)
	mpstruc (11)
	PDBTM (9)
	MemProtMD (8)

Symmetry Type

	Asymmetric (752)
	Cyclic (285)
	Dihedral (33)
	Helical (11)
	Octahedral (2)
	Tetrahedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (203)
	Artifacts (156)
	All alpha proteins (85)
	Small proteins (72)
	All beta proteins (63)
	Alpha and beta proteins (a+b) (34)
	Alpha and beta proteins (a/b) (32)
	Coiled coil proteins (9)
	Peptides (3)

AllSelected

1 to 25 of 1,018 Structures

Page 1 of 41

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1A1W \| pdb_00001a1w	Download File View File

FADD DEATH EFFECTOR DOMAIN, F25Y MUTANT, NMR MINIMIZED AVERAGE STRUCTURE

Eberstadt, M., Huang, B., Chen, Z., Meadows, R.P., Ng, C., Fesik, S.W.

(1998) Nature 392: 941-945

Released	1998-12-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FADD PROTEIN (protein)

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1A1Z \| pdb_00001a1z	Download File View File

FADD DEATH EFFECTOR DOMAIN, F25G MUTANT, NMR MINIMIZED AVERAGE STRUCTURE

Eberstadt, M., Huang, B., Chen, Z., Meadows, R.P., Ng, C., Fesik, S.W.

(1998) Nature 392: 941-945

Released	1998-12-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FADD PROTEIN (protein)

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1C15 \| pdb_00001c15	Download File View File

SOLUTION STRUCTURE OF APAF-1 CARD

Zhou, P., Chou, J., Olea, R.S., Yuan, J., Wagner, G.

(1999) Proc Natl Acad Sci U S A 96: 11265-11270

Released	1999-09-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	APOPTOTIC PROTEASE ACTIVATING FACTOR 1 (protein)

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1C9Q \| pdb_00001c9q	Download File View File

AVERAGE NMR SOLUTION STRUCTURE OF THE BIR-2 DOMAIN OF XIAP

Meadows, R.P., Fesik, S.W.

(1999) Nature 401: 818-822

Released	2000-08-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	APOPTOSIS INHIBITOR IAP HOMOLOG (protein)
Unique Ligands	ZN

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1CWW \| pdb_00001cww	Download File View File

SOLUTION STRUCTURE OF THE CASPASE RECRUITMENT DOMAIN (CARD) FROM APAF-1

Day, C.L., Dupont, C., Lackmann, M., Vaux, D.L., Hinds, M.G.

(1999) Cell Death Differ 6: 1125-1132

Released	2000-01-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	APOPTOTIC PROTEASE ACTIVATING FACTOR 1 (protein)

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1CY5 \| pdb_00001cy5	Download File View File

CRYSTAL STRUCTURE OF THE APAF-1 CARD

Vaughn, D.E., Joshua-Tor, L.

(1999) J Mol Biology 293: 439-447

Released	1999-09-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (APOPTOTIC PROTEASE ACTIVATING FACTOR 1) (protein)
Unique Ligands	BME, ZN

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1CZY \| pdb_00001czy	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE TRAF DOMAIN OF HUMAN TRAF2 AND AN LMP1 BINDING PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	LATENT MEMBRANE PROTEIN 1 (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1CZZ \| pdb_00001czz	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A 17-RESIDUE CD40 PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	CD 40 PEPTIDE (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1D00 \| pdb_00001d00	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A 5-RESIDUE CD40 PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	B-CELL SURFACE ANTIGEN CD40 (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1D01 \| pdb_00001d01	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A HUMAN CD30 PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2003-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CD30 PEPTIDE (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR 2 (protein)

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1D0A \| pdb_00001d0a	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 (TRAF2) IN COMPLEX WITH A HUMAN OX40 PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	OX40L RECEPTOR PEPTIDE (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1D0G \| pdb_00001d0g	Download File View File

CRYSTAL STRUCTURE OF DEATH RECEPTOR 5 (DR5) BOUND TO APO2L/TRAIL

Hymowitz, S.G., Christinger, H.W., Fuh, G., O'Connell, M.P., Kelley, R.F., Ashkenazi, A., de Vos, A.M.

(1999) Mol Cell 4: 563-571

Released	1999-10-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	APOPTOSIS-2 LIGAND (protein) DEATH RECEPTOR-5 (protein)
Unique Ligands	CL, ZN

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1D0J \| pdb_00001d0j	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A M4-1BB PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	4-1BB LIGAND RECEPTOR (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1D2Z \| pdb_00001d2z	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A COMPLEX BETWEEN THE DEATH DOMAINS OF PELLE AND TUBE

Xiao, T., Towb, P., Wasserman, S.A., Sprang, S.R.

(1999) Cell 99: 545-555

Released	1999-11-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	DEATH DOMAIN OF PELLE (protein) DEATH DOMAIN OF TUBE (protein)
Unique Ligands	EPE

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1D4B \| pdb_00001d4b	Download File View File

CIDE-N DOMAIN OF HUMAN CIDE-B

Lugovskoy, A., Zhou, P., Chou, J., McCarty, J., Li, P., Wagner, G.

(1999) Cell 99: 747-755

Released	1999-12-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HUMAN CELL DEATH-INDUCING EFFECTOR B (protein)

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1D4V \| pdb_00001d4v	Download File View File

Crystal structure of trail-DR5 complex

Mongkolsapaya, J., Grimes, J.M., Stuart, D.I., Jones, E.Y., Screaton, G.R.

(1999) Nat Struct Biol 6: 1048-1053

Released	1999-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DEATH RECEPTOR 5 (protein) TNF-RELATED APOPTOSIS INDUCING LIGAND (protein)

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1DDB \| pdb_00001ddb	Download File View File

STRUCTURE OF MOUSE BID, NMR, 20 STRUCTURES

Mcdonnell, J.M., Fushman, D., Milliman, C., Korsmeyer, S.J., Cowburn, D.

(1999) Cell 96: 625-634

Released	1999-08-30
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	PROTEIN (BID) (protein)

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1DG6 \| pdb_00001dg6	Download File View File

CRYSTAL STRUCTURE OF APO2L/TRAIL

Hymowitz, S.G., O'ConnelL, M.P., Ultsch, M.H., de Vos, A.M., Kelley, R.F.

(2000) Biochemistry 39: 633-650

Released	2000-01-26
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	APO2L/TNF-RELATED APOPOTIS INDUCING LIGAND (TRAIL) (protein)
Unique Ligands	CL, ZN

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1DU3 \| pdb_00001du3	Download File View File

Crystal structure of TRAIL-SDR5

Cha, S.-S., Sung, B.-J., Oh, B.-H.

(2000) J Biological Chem 275: 31171-31177

Released	2000-09-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DEATH RECEPTOR 5 (protein) TNF-RELATED APOPTOSIS INDUCING LIGAND (protein)
Unique Ligands	ZN

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1E3Y \| pdb_00001e3y	Download File View File

Death domain from human FADD/MORT1

Driscoll, P.C., Berglund, H., Olerenshaw, D., McDonald, N.Q.

(2000) J Mol Biology 302: 171

Released	2000-11-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FADD PROTEIN (protein)

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1E41 \| pdb_00001e41	Download File View File

Death domain from human FADD/MORT1

Driscoll, P.C., Berglund, H., Olerenshaw, D., McDonald, N.Q.

(2000) J Mol Biology 302: 171

Released	2000-11-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FADD PROTEIN (protein)

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1F16 \| pdb_00001f16	Download File View File

SOLUTION STRUCTURE OF A PRO-APOPTOTIC PROTEIN BAX

Suzuki, M., Youle, R.J., Tjandra, N.

(2000) Cell 103: 645-654

Released	2000-11-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (APOPTOSIS REGULATOR BAX, MEMBRANE ISOFORM ALPHA) (protein)

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1F2H \| pdb_00001f2h	Download File View File

SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE TNFR1 ASSOCIATED PROTEIN, TRADD.

Tsao, D., McDonaugh, T., Malakian, K., Xu, G.-Y., Telliez, J.-B., Hsu, H., Lin, L.-L.

(2000) Mol Cell 5: 1051-1057

Released	2001-05-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN (protein)

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1F3H \| pdb_00001f3h	Download File View File

X-RAY CRYSTAL STRUCTURE OF THE HUMAN ANTI-APOPTOTIC PROTEIN SURVIVIN

Verdecia, M.A., Huang, H., Dutil, E., Hunter, T., Noel, J.P.

(2000) Nat Struct Biol 7: 602-608

Released	2000-12-06
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Homo sapiens
Macromolecule	SURVIVIN (protein)
Unique Ligands	SO4, ZN

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1F3V \| pdb_00001f3v	Download File View File

Crystal structure of the complex between the N-terminal domain of TRADD and the TRAF domain of TRAF2

Park, Y.C., Ye, H., Hsia, C., Segal, D., Rich, R., Liou, H.-C., Myszka, D., Wu, H.

(2000) Cell 101: 777-787

Released	2000-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN (protein) TUMOR NECROSIS FACTOR RECEPTOR-ASSOCIATED PROTEIN (protein)

1 to 25 of 1,018 Structures

Page 1 of 41

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A1W | pdb_00001a1w

1A1Z | pdb_00001a1z

1C15 | pdb_00001c15

1C9Q | pdb_00001c9q

1CWW | pdb_00001cww

1CY5 | pdb_00001cy5

1CZY | pdb_00001czy

1CZZ | pdb_00001czz

1D00 | pdb_00001d00

1D01 | pdb_00001d01

1D0A | pdb_00001d0a

1D0G | pdb_00001d0g

1D0J | pdb_00001d0j

1D2Z | pdb_00001d2z

1D4B | pdb_00001d4b

1D4V | pdb_00001d4v

1DDB | pdb_00001ddb

1DG6 | pdb_00001dg6

1DU3 | pdb_00001du3

1E3Y | pdb_00001e3y

1E41 | pdb_00001e41

1F16 | pdb_00001f16

1F2H | pdb_00001f2h

1F3H | pdb_00001f3h

1F3V | pdb_00001f3v