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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "HYDROLASE"

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Search Summary

This query matches 225 Structures.

Refinements

Structure Determination Methodology

experimental (225)

Scientific Name of Source Organism

	Halobacterium salinarum (122)
	Halobacterium salinarum NRC-1 (81)
	Halobacterium salinarum R1 (19)
	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (3)

Taxonomy

Archaea (225)

Experimental Method

	X-RAY DIFFRACTION (207)
	SOLUTION NMR (9)
	ELECTRON CRYSTALLOGRAPHY (6)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (225)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (18)
	1.5 - 2.0 (85)
	2.0 - 2.5 (81)
	2.5 - 3.0 (22)
	3.0 - 3.5 (7)
	3.5 - 4.0 (3)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (14)
	2000 - 2004 (48)
	2005 - 2009 (36)
	2010 - 2014 (29)
	2015 - 2019 (69)
	2020 - 2024 (16)
	2025 - 2029 (9)

Enzyme Classification Name

	Oxidoreductases (5)
	Hydrolases (4)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (178)
	MemProtMD (165)
	mpstruc (74)
	OPM (8)

Symmetry Type

	Cyclic (138)
	Asymmetric (65)
	Tetrahedral (22)
	Dihedral (4)
	Helical (3)

SCOP Classification

	Membrane and cell surface proteins and peptides (153)
	Alpha and beta proteins (a+b) (22)
	All alpha proteins (6)
	Peptides (3)
	Alpha and beta proteins (a/b) (2)
	Artifacts (1)

AllSelected

1 to 25 of 225 Structures

Page 1 of 9

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1AP9 \| pdb_00001ap9	Download File View File

X-RAY STRUCTURE OF BACTERIORHODOPSIN FROM MICROCRYSTALS GROWN IN LIPIDIC CUBIC PHASES

Pebay-Peyroula, E., Rummel, G., Rosenbusch, J.P., Landau, E.M.

(1997) Science 277: 1676-1681

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1AT9 \| pdb_00001at9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY

Kimura, Y., Vassylyev, D.G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T., Fujiyoshi, Y.

(1997) Nature 389: 206-211

Released	1998-09-16
Method	ELECTRON CRYSTALLOGRAPHY 2.8 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1BCT \| pdb_00001bct	Download File View File

THREE-DIMENSIONAL STRUCTURE OF PROTEOLYTIC FRAGMENT 163-231 OF BACTERIOOPSIN DETERMINED FROM NUCLEAR MAGNETIC RESONANCE DATA IN SOLUTION

Nolde, D.E., Barsukov, I.L., Lomize, A.L., Arseniev, A.S.

(1992) Eur J Biochem 206: 665-672

Released	1994-04-30
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)

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1BHA \| pdb_00001bha	Download File View File

THREE-DIMENSIONAL STRUCTURE OF (1-71) BACTERIOOPSIN SOLUBILIZED IN METHANOL-CHLOROFORM AND SDS MICELLES DETERMINED BY 15N-1H HETERONUCLEAR NMR SPECTROSCOPY

Pervushin, K.V., Orekhov, V.Y., Popov, A.I., Musina, L.Y., Arseniev, A.S.

(1994) Eur J Biochem 219: 571-583

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)

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1BHB \| pdb_00001bhb	Download File View File

Three-dimensional structure of (1-71) bacterioopsin solubilized in methanol-chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy

Orekhov, V.Y., Pervushin, K.V., Popov, A.I., Musina, L.Y., Arseniev, A.S.

(1994) Eur J Biochem 219: 571-583

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)

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1BM1 \| pdb_00001bm1	Download File View File

CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE

Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N., Kouyama, T.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1251-1256

Released	1999-04-27
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	DPG, RET

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1BRD \| pdb_00001brd	Download File View File

Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy

Henderson, R., Baldwin, J.M., Ceska, T.A., Zemlin, F., Beckmann, E., Downing, K.H.

(1990) J Mol Biology 213: 899-929

Released	1991-04-15
Method	ELECTRON CRYSTALLOGRAPHY 3.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN PRECURSOR (protein)
Unique Ligands	RET

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1BRR \| pdb_00001brr	Download File View File

X-RAY STRUCTURE OF THE BACTERIORHODOPSIN TRIMER/LIPID COMPLEX

Essen, L.-O., Siegert, R., Oesterhelt, D.

(1998) Proc Natl Acad Sci U S A 95: 11673-11678

Released	1998-09-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Halobacterium salinarum
Macromolecule	PROTEIN (BACTERIORHODOPSIN) (protein)
Unique Ligands	ARC, BGC, GOL, OCT, RET
Unique branched monosaccharides	GLC, MAN, SGA

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1BRX \| pdb_00001brx	Download File View File

BACTERIORHODOPSIN/LIPID COMPLEX

Luecke, H., Richter, H.T., Lanyi, J.

(1998) Science 280: 1934-1937

Released	1999-01-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1C3W \| pdb_00001c3w	Download File View File

BACTERIORHODOPSIN/LIPID COMPLEX AT 1.55 A RESOLUTION

Luecke, H.

(1999) J Mol Biology 291: 899-911

Released	1999-09-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (GROUND STATE WILD TYPE "BR") (protein)
Unique Ligands	LI1, RET, SQU

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1C8R \| pdb_00001c8r	Download File View File

BACTERIORHODOPSIN D96N BR STATE AT 2.0 A RESOLUTION

Luecke, H.

(1999) Science 286: 255-260

Released	1999-10-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium salinarum
Macromolecule	PROTEIN (BACTERIORHODOPSIN) (protein)
Unique Ligands	LI1, RET, SQU

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1C8S \| pdb_00001c8s	Download File View File

BACTERIORHODOPSIN D96N LATE M STATE INTERMEDIATE

Luecke, H.

(1999) Science 286: 255-260

Released	1999-10-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN ("M" STATE INTERMEDIATE) (protein)
Unique Ligands	LI1, RET, SQU

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1CWQ \| pdb_00001cwq	Download File View File

M INTERMEDIATE STRUCTURE OF THE WILD TYPE BACTERIORHODOPSIN IN COMBINATION WITH THE GROUND STATE STRUCTURE

Sass, H.J., Berendzen, J., Neff, D., Gessenich, R., Ormos, P., Bueldt, G.

(2000) Nature 406: 649-653

Released	1999-10-20
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN ("M" STATE INTERMEDIATE IN COMBINATION WITH GROUND STATE) (protein)
Unique Ligands	HEX, OCT, RET, TRD, UND

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1DZE \| pdb_00001dze	Download File View File

Structure of the M Intermediate of Bacteriorhodopsin trapped at 100K

Takeda, K., Matsui, Y., Sato, H., Hino, T., Kanamori, E., Okumura, H., Yamane, T., Iizuka, T., Kamiya, N., Adachi, S., Kouyama, T.

(2004) J Mol Biology 341: 1023

Released	2000-08-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (M INTERMEDIATE) (protein)
Unique Ligands	L1P, L2P, L3P, L4P, RET
Unique branched monosaccharides	GAL, GLC, MAN

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1E0P \| pdb_00001e0p	Download File View File

L intermediate of bacteriorhodopsin

Royant, A., Edman, K., Ursby, T., Pebay-Peyroula, E., Landau, E.M., Neutze, R.

(2000) Nature 406: 645

Released	2000-08-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN, GROUND STATE (protein)
Unique Ligands	RET

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1E0Z \| pdb_00001e0z	Download File View File

[2Fe-2S]-Ferredoxin from Halobacterium salinarum

Schweimer, K., Marg, B., Oesterhelt, D., Roesch, P., Sticht, H.

(2005) Biochemistry 44: 29

Released	2001-04-12
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	FERREDOXIN (protein)
Unique Ligands	FES

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1E10 \| pdb_00001e10	Download File View File

[2Fe-2S]-Ferredoxin from Halobacterium salinarum

Marg, B.-L., Schweimer, K., Oesterhelt, D., Roesch, P., Sticht, H.

(2005) Biochemistry 44: 29

Released	2001-04-09
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	FERREDOXIN (protein)
Unique Ligands	ACE, FES

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1E12 \| pdb_00001e12	Download File View File

Halorhodopsin, a light-driven chloride pump

Essen, L.-O., Kolbe, M., Oesterhelt, D.

(2000) Science 288: 1390

Released	2000-06-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium salinarum
Macromolecule	HALORHODOPSIN (protein)
Unique Ligands	CL, K, OLC, PLM, RET

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1F4Z \| pdb_00001f4z	Download File View File

BACTERIORHODOPSIN-M PHOTOINTERMEDIATE STATE OF THE E204Q MUTANT AT 1.8 ANGSTROM RESOLUTION

Luecke, H., Schobert, B., Cartailler, J.P., Richter, H.T., Rosengarth, A., Needleman, R., Lanyi, J.K.

(2000) J Mol Biology 300: 1237-1255

Released	2000-08-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	LI1, RET, SQU

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1F50 \| pdb_00001f50	Download File View File

BACTERIORHODOPSIN-BR STATE OF THE E204Q MUTANT AT 1.7 ANGSTROM RESOLUTION

Luecke, H., Schobert, B., Cartailler, J.P., Richter, H.T., Rosengarth, A., Needleman, R., Lanyi, J.K.

(2000) J Mol Biology 300: 1237-1255

Released	2000-08-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	LI1, RET, SQU

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1FBB \| pdb_00001fbb	Download File View File

CRYSTAL STRUCTURE OF NATIVE CONFORMATION OF BACTERIORHODOPSIN

Subramaniam, S., Henderson, R.

(2000) Nature 406: 653-657

Released	2000-08-09
Method	ELECTRON CRYSTALLOGRAPHY 3.2 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1FBK \| pdb_00001fbk	Download File View File

CRYSTAL STRUCTURE OF CYTOPLASMICALLY OPEN CONFORMATION OF BACTERIORHODOPSIN

Subramaniam, S., Henderson, R.

(2000) Nature 406: 653-657

Released	2000-08-09
Method	ELECTRON CRYSTALLOGRAPHY 3.2 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1IW6 \| pdb_00001iw6	Download File View File

Crystal Structure of the Ground State of Bacteriorhodopsin

Kouyama, T., Okumura, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) J Mol Biology 324: 469-481

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Halobacterium salinarum
Macromolecule	bacteriorhodopsin (protein)
Unique Ligands	L2P, L3P, RET
Unique branched monosaccharides	GAL, GLC, MAN

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1IW9 \| pdb_00001iw9	Download File View File

Crystal Structure of the M Intermediate of Bacteriorhodopsin

Takeda, K., Matsui, Y., Kamiya, N., Adachi, S., Okumura, H., Kouyama, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Mol Biology 341: 1023-1037

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Halobacterium salinarum
Macromolecule	bacteriorhodopsin (protein)
Unique Ligands	L2P, L3P, RET
Unique branched monosaccharides	GAL, GLC, MAN

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1IXF \| pdb_00001ixf	Download File View File

Crystal Structure of the K intermediate of bacteriorhodopsin

Matsui, Y., Sakai, K., Murakami, M., Shiro, Y., Adachi, S., Okumura, H., Kouyama, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) J Mol Biology 324: 469-481

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Halobacterium salinarum
Macromolecule	bacteriorhodopsin (protein)
Unique Ligands	L2P, L3P, RET
Unique branched monosaccharides	GAL, GLC, MAN

1 to 25 of 225 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AP9 | pdb_00001ap9

1AT9 | pdb_00001at9

1BCT | pdb_00001bct

1BHA | pdb_00001bha

1BHB | pdb_00001bhb

1BM1 | pdb_00001bm1

1BRD | pdb_00001brd

1BRR | pdb_00001brr

1BRX | pdb_00001brx

1C3W | pdb_00001c3w

1C8R | pdb_00001c8r

1C8S | pdb_00001c8s

1CWQ | pdb_00001cwq

1DZE | pdb_00001dze

1E0P | pdb_00001e0p

1E0Z | pdb_00001e0z

1E10 | pdb_00001e10

1E12 | pdb_00001e12

1F4Z | pdb_00001f4z

1F50 | pdb_00001f50

1FBB | pdb_00001fbb

1FBK | pdb_00001fbk

1IW6 | pdb_00001iw6

1IW9 | pdb_00001iw9

1IXF | pdb_00001ixf