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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "SPLICING"

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Search Summary

This query matches 727 Structures.

Refinements

Structure Determination Methodology

experimental (727)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (424)
	Homo sapiens (191)
	Saccharomyces cerevisiae (31)
	synthetic construct (18)
	unidentified adenovirus (17)
	Caenorhabditis elegans (9)
	Drosophila melanogaster (7)
	Thermochaetoides thermophila DSM 1495 (7)
	Comamonas testosteroni KF-1 (6)
	Synechocystis sp. PCC 6803 substr. Kazusa (6)

More...

Taxonomy

	Eukaryota (688)
	Bacteria (29)
	Varidnaviria (21)
	other sequences (18)
	Archaea (6)
	unclassified sequences (4)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (557)
	ELECTRON MICROSCOPY (133)
	SOLUTION NMR (36)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (718)
	RNA (153)
	DNA (6)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (59)
	1.5 - 2.0 (386)
	2.0 - 2.5 (51)
	2.5 - 3.0 (49)
	3.0 - 3.5 (76)
	3.5 - 4.0 (26)
	4.0 - 4.5 (15)
	> 4.5 (28)

Release Date

	2005 - 2009 (30)
	2010 - 2014 (41)
	2015 - 2019 (113)
	2020 - 2024 (526)
	2025 - 2029 (17)

Enzyme Classification Name

	Hydrolases (114)
	Transferases (84)
	Isomerases (52)
	Ligases (6)
	Lyases (3)
	Oxidoreductases (2)
	Translocases (1)

Symmetry Type

	Asymmetric (678)
	Cyclic (43)
	Dihedral (8)

SCOP Classification

	All beta proteins (159)
	Alpha and beta proteins (a/b) (156)
	All alpha proteins (146)
	Artifacts (152)
	Alpha and beta proteins (a+b) (24)
	Small proteins (14)
	Peptides (3)
	Coiled coil proteins (3)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 727 Structures

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2JVZ \| pdb_00002jvz	Download File View File

Solution NMR Structure of the Second and Third KH Domains of KSRP

Diaz-Moreno, I., Hollingworth, D., Garcia-Mayoral, M.F., Kelly, G., Cukier, C.D., Ramos, A.

(2007) To be published

Released	2009-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Far upstream element-binding protein 2 (protein)

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2KEQ \| pdb_00002keq	Download File View File

Solution structure of DnaE intein from Nostoc punctiforme

Oeemig, J.S., Aranko, A.S., Djupsj, J.B., Iwai, H.

(2009) FEBS Lett 583: 1451-1456

Released	2009-05-19
Method	SOLUTION NMR
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	DNA polymerase III alpha subunit, Nucleic acid binding OB-fold tRNA/helicase-type (protein)

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2L5I \| pdb_00002l5i	Download File View File

structure of the spliceosomal phosphopeptide P140 (non-phosphorylated form)

Quinternet, M., Page, N., Schall, N., Strub, J., Chaloin, O., Decossas, M., Cung, M., van Dorsselaer, A., Briand, J., Muller, S.

(2009) PLoS One 4: e5273-e5273

Released	2010-12-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein 70 kDa (protein)

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2L5J \| pdb_00002l5j	Download File View File

structure of the spliceosomal phosphopeptide P140 (phosphorylated form)

Quinternet, M., Page, N., Schall, N., Strub, J., Chaloin, O., Decossas, M., Cung, M., van Dorsselaer, A., Briand, J., Muller, S.

(2009) PLoS One 4: e5273-e5273

Released	2010-12-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein 70 kDa (protein)

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2M0G \| pdb_00002m0g	Download File View File

Structure, phosphorylation and U2AF65 binding of the Nterminal Domain of splicing factor 1 during 3 splice site Recognition

Madl, T., Sattler, M., Zhang, Y., Bagdiul, I., Kern, T., Kang, H., Zou, P., Maeusbacher, N., Sieber, S.A., Kraemer, A.

(2013) Nucleic Acids Res 41: 1343-1354

Released	2013-01-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Splicing factor 1 (protein) Splicing factor U2AF 65 kDa subunit (protein)

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2MJU \| pdb_00002mju	Download File View File

Solution structure of a C terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB)

Esteve, V., Blatter, M., Allain, F.H.-T.

(2014) PeerJ 2: e305-e305

Released	2014-02-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Polypyrimidine tract-binding protein 2 (protein)

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2MKC \| pdb_00002mkc	Download File View File

Cooperative Structure of the Heterotrimeric pre-mRNA Retention and Splicing Complex

Wysoczanski, P., Schneider, C., Xiang, S., Munari, F., Trowitzsch, S., Wahl, M.C., Luhrmann, R., Becker, S., Zweckstetter, M.

(2014) Nat Struct Mol Biol 21: 911-918

Released	2014-09-03
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Pre-mRNA leakage protein 1 (protein) Pre-mRNA-splicing factor CWC26 (protein) U2 snRNP component IST3 (protein)

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2MXT \| pdb_00002mxt	Download File View File

NMR structure of the acidic domain of SYNCRIP (hnRNPQ)

Serrano, P., Wuthrich, K., Beuck, C., Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL)

To be published

Released	2015-01-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Heterogeneous nuclear ribonucleoprotein Q (protein)

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2MY1 \| pdb_00002my1	Download File View File

Solution structure of Bud31p

van Roon, A.M., Yang, J., Mathieu, D., Bermel, W., Nagai, K., Neuhaus, D.

(2015) Angew Chem Int Ed Engl 54: 4861-4864

Released	2015-03-11
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Pre-mRNA-splicing factor BUD31 (protein)
Unique Ligands	ZN

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2MY2 \| pdb_00002my2	Download File View File

Snu17p-Bud13p structure intermediate during RES complex assembly

Wysoczanski, P., Becker, S., Zweckstetter, M.

(2015) Sci Rep 5: 12545-12545

Released	2015-08-12
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Pre-mRNA-splicing factor CWC26 (protein) U2 snRNP component IST3 (protein)

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2MY3 \| pdb_00002my3	Download File View File

Snu17p-Pml1p structure intermediate during RES complex assembly

Wysoczanski, P., Becker, S., Zweckstetter, M.

(2015) Sci Rep 5: 12545-12545

Released	2015-08-12
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Pre-mRNA leakage protein 1 (protein) U2 snRNP component IST3 (protein)

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2P87 \| pdb_00002p87	Download File View File

Crystal structure of the C-terminal domain of C. elegans pre-mRNA splicing factor Prp8

Zhang, L., Shen, J., Guarnieri, M.T., Heroux, A., Yang, K., Zhao, R.

(2007) Protein Sci 16: 1024-1031

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Caenorhabditis elegans
Macromolecule	Pre-mRNA-splicing factor Prp8 (protein)

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2P8R \| pdb_00002p8r	Download File View File

Crystal structure of the C-terminal domain of C. elegans pre-mRNA splicing factor Prp8 carrying R2303K mutant

Zhang, L., Shen, J., Guarnieri, M.T., Heroux, A., Yang, K., Zhao, R.

(2007) Protein Sci 16: 1024-1031

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	Pre-mRNA-splicing factor Prp8 (protein)

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2VY4 \| pdb_00002vy4	Download File View File

U11-48K CHHC ZN-FINGER DOMAIN

Tidow, H., Andreeva, A., Rutherford, T.J., Fersht, A.R.

(2009) Structure 17: 294-302

Released	2009-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEIN (protein)
Unique Ligands	ZN

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2VY5 \| pdb_00002vy5	Download File View File

U11-48K CHHC Zn-finger protein domain

Tidow, H., Andreeva, A., Rutherford, T.J., Fersht, A.R.

(2009) Structure 17: 294-302

Released	2009-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEIN (protein)
Unique Ligands	ZN

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2WAC \| pdb_00002wac	Download File View File

Extended Tudor domain of Drosophila Melanogaster Tudor-SN (p100)

Friberg, A., Corsini, L., Sattler, M.

(2009) J Mol Biology 387: 921

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Drosophila melanogaster
Macromolecule	CG7008-PA (protein)

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2WFH \| pdb_00002wfh	Download File View File

The Human Slit 2 Dimerization Domain D4

Seiradake, E., von Philipsborn, A.C., Henry, M., Fritz, M., Lortat-Jacob, H., Jamin, M., Hemrika, W., Bastmeyer, M., Cusack, S., McCarthy, A.A.

(2009) EMBO Rep 10: 736-741

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	SLIT HOMOLOG 2 PROTEIN C-PRODUCT (protein)
Unique Ligands	SO4

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2ZYZ \| pdb_00002zyz	Download File View File

Pyrobaculum aerophilum splicing endonuclease

Yoshinari, S., Inaoka, D.K., Watanabe, Y., Shiba, T., Kurisu, G., Harada, S.

(2009) Nucleic Acids Res 37: 4787-4798

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	Putative uncharacterized protein PAE0789 (protein) tRNA-splicing endonuclease (protein)

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3C7I \| pdb_00003c7i	Download File View File

X-RAY crystal structure of the complex between the grb2-sh2 domain and a flexible ligand, FPTVN.

Benfield, A.P., Martin, S.F.

(2006) Angew Chem Int Ed Engl 118: 6984-6989

Released	2008-08-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Growth factor receptor-bound protein 2 (protein)
Unique Ligands	FMT, TVN

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3CW1 \| pdb_00003cw1	Download File View File

Crystal Structure of Human Spliceosomal U1 snRNP

Pomeranz Krummel, D.A., Oubridge, C., Leung, A.K., Li, J., Nagai, K.

(2009) Nature 458: 475-480

Released	2009-03-24
Method	X-RAY DIFFRACTION 5.493 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 1
Unique Ligands	ZN

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3E66 \| pdb_00003e66	Download File View File

Crystal structure of the beta-finger domain of yeast Prp8

Yang, K., Zhang, L., Xu, T., Heroux, A., Zhao, R.

(2008) Proc Natl Acad Sci U S A 105: 13817-13822

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PRP8 (protein)

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3EGN \| pdb_00003egn	Download File View File

C-terminal RNA Recognition Motif of the U11/U12 65K Protein

Netter, C., Wahl, M.C.

(2009) RNA 15: 1305-1313

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	RNA-binding protein 40 (protein)

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3ELS \| pdb_00003els	Download File View File

Crystal Structure of Yeast Pml1p, Residues 51-204

Trowitzsch, S., Weber, G., Luehrmann, R., Wahl, M.C.

(2009) J Mol Biology 385: 531-541

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Pre-mRNA leakage protein 1 (protein)
Unique Ligands	CL, GOL, MG

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3ELV \| pdb_00003elv	Download File View File

Crystal Structure of Full-Length Yeast Pml1p

Trowitzsch, S., Weber, G., L hrmann, R., Wahl, M.C.

(2009) J Mol Biology 385: 531-541

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Pre-mRNA leakage protein 1 (protein)
Unique Ligands	SO4

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3EO2 \| pdb_00003eo2	Download File View File

Crystal structure of the RhoGEF domain of human neuroepithelial cell-transforming gene 1 protein

Nedyalkova, L., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Neuroepithelial cell-transforming gene 1 protein (protein)
Unique Ligands	UNX

1 to 25 of 727 Structures

Page 1 of 30

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2JVZ | pdb_00002jvz

2KEQ | pdb_00002keq

2L5I | pdb_00002l5i

2L5J | pdb_00002l5j

2M0G | pdb_00002m0g

2MJU | pdb_00002mju

2MKC | pdb_00002mkc

2MXT | pdb_00002mxt

2MY1 | pdb_00002my1

2MY2 | pdb_00002my2

2MY3 | pdb_00002my3

2P87 | pdb_00002p87

2P8R | pdb_00002p8r

2VY4 | pdb_00002vy4

2VY5 | pdb_00002vy5

2WAC | pdb_00002wac

2WFH | pdb_00002wfh

2ZYZ | pdb_00002zyz

3C7I | pdb_00003c7i

3CW1 | pdb_00003cw1

3E66 | pdb_00003e66

3EGN | pdb_00003egn

3ELS | pdb_00003els

3ELV | pdb_00003elv

3EO2 | pdb_00003eo2