RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Space Group = "I 41 2 2"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 1,065 Structures.

Refinements

Structure Determination Methodology

experimental (1,065)

Scientific Name of Source Organism

	Homo sapiens (204)
	Streptomyces avidinii (103)
	Escherichia coli (82)
	Mus musculus (33)
	synthetic construct (30)
	Severe acute respiratory syndrome coronavirus 2 (29)
	Arabidopsis thaliana (23)
	Bos taurus (19)
	Escherichia coli K-12 (18)
	Staphylococcus aureus (18)

More...

Taxonomy

	Bacteria (529)
	Eukaryota (438)
	Riboviria (45)
	Archaea (34)
	other sequences (30)
	Duplodnaviria (6)
	unclassified sequences (4)
	Eukaryota (eukaryotes) (1)
	Monodnaviria (1)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (1,065)

Polymer Entity Type

	Protein (1,053)
	DNA (22)
	RNA (12)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (66)
	1.5 - 2.0 (296)
	2.0 - 2.5 (334)
	2.5 - 3.0 (261)
	3.0 - 3.5 (82)
	3.5 - 4.0 (14)
	4.0 - 4.5 (4)
	> 4.5 (7)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (62)
	2000 - 2004 (80)
	2005 - 2009 (177)
	2010 - 2014 (220)
	2015 - 2019 (258)
	2020 - 2024 (237)
	2025 - 2029 (28)

Enzyme Classification Name

	Oxidoreductases (138)
	Hydrolases (164)
	Transferases (134)
	Lyases (49)
	Translocases (23)
	Isomerases (14)
	Ligases (11)

Membrane Protein Annotation

	PDBTM (24)
	MemProtMD (20)
	OPM (21)
	mpstruc (5)

Symmetry Type

	Asymmetric (396)
	Cyclic (399)
	Dihedral (368)
	Tetrahedral (3)
	Octahedral (1)

SCOP Classification

	All beta proteins (174)
	Alpha and beta proteins (a+b) (131)
	All alpha proteins (134)
	Alpha and beta proteins (a/b) (125)
	Membrane and cell surface proteins and peptides (17)
	Artifacts (119)
	Multi-domain proteins (alpha and beta) (25)
	Small proteins (20)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 1,065 Structures

Page 1 of 43

Sort by

Explore in 3D

1A5Z \| pdb_00001a5z	Download File View File

LACTATE DEHYDROGENASE FROM THERMOTOGA MARITIMA (TMLDH)

Auerbach, G., Ostendorp, R., Prade, L., Korndoerfer, I., Dams, T., Huber, R., Jaenicke, R.

(1998) Structure 6: 769-781

Released	1999-03-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	L-LACTATE DEHYDROGENASE (protein)
Unique Ligands	CD, FBP, NAD, OXM

Explore in 3D

1A6I \| pdb_00001a6i	Download File View File

TET REPRESSOR, CLASS D VARIANT

Orth, P., Cordes, F., Schnappinger, D., Hillen, W., Saenger, W., Hinrichs, W.

(1998) J Mol Biology 279: 439-447

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)

Explore in 3D

1B55 \| pdb_00001b55	Download File View File

PH DOMAIN FROM BRUTON'S TYROSINE KINASE IN COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE

Djinovic Carugo, K., Baraldi, E., Hyvoenen, M., Lo Surdo, P., Riley, A.M., Potter, B.V.L., O'Brien, R., Ladbury, J.E., Saraste, M.

(1999) Structure 7: 449-460

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	TYROSINE-PROTEIN KINASE BTK (protein)
Unique Ligands	4IP, ZN

Explore in 3D

1B89 \| pdb_00001b89	Download File View File

CLATHRIN HEAVY CHAIN PROXIMAL LEG SEGMENT (BOVINE)

Ybe, J.A., Brodsky, F.M., Hofmann, K., Lin, K., Liu, S.-H., Chen, L., Earnest, T.N., Fletterick, R.J., Hwang, P.K.

(1999) Nature 399: 371-375

Released	1999-06-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (CLATHRIN HEAVY CHAIN) (protein)

Explore in 3D

1BCG \| pdb_00001bcg	Download File View File

SCORPION TOXIN BJXTR-IT

Oren, D., Froy, O., Amit, E., Kleinberger-Doron, N., Gurevitz, M., Shaanan, B.

(1998) Structure 6: 1095-1103

Released	1998-11-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Hottentotta judaicus
Macromolecule	TOXIN BJXTR-IT (protein)

Explore in 3D

1BJZ \| pdb_00001bjz	Download File View File

TETRACYCLINE CHELATED MG2+-ION INITIATES HELIX UNWINDING FOR TET REPRESSOR INDUCTION

Orth, P., Saenger, W., Hinrichs, W.

(1999) Biochemistry 38: 191-198

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR (protein)

Explore in 3D

1BUO \| pdb_00001buo	Download File View File

BTB DOMAIN FROM PLZF

Ahmad, K.F., Engel, C.K., Prive, G.G.

(1998) Proc Natl Acad Sci U S A 95: 12123-12128

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PROMYELOCYTIC LEUKEMIA ZINC FINGER PROTEIN PLZF) (protein)

Explore in 3D

1BWN \| pdb_00001bwn	Download File View File

PH DOMAIN AND BTK MOTIF FROM BRUTON'S TYROSINE KINASE MUTANT E41K IN COMPLEX WITH INS(1,3,4,5)P4

Djinovic Carugo, K., Baraldi, E., Hyvoenen, M., Lo Surdo, P., Riley, A., Potter, B., Saraste, M.

(1999) Structure 7: 449-460

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	BRUTON'S TYROSINE KINASE (protein)
Unique Ligands	4IP, ZN

Explore in 3D

1CD9 \| pdb_00001cd9	Download File View File

2:2 COMPLEX OF G-CSF WITH ITS RECEPTOR

Aritomi, M., Kunishima, N., Okamoto, T., Kuroki, R., Ota, Y., Morikawa, K.

(1999) Nature 401: 713-717

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	PROTEIN (G-CSF RECEPTOR) (protein) PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) (protein)
Unique Ligands	NAG

Explore in 3D

1CK7 \| pdb_00001ck7	Download File View File

GELATINASE A (FULL-LENGTH)

Morgunova, E., Tuuttila, A., Bergmann, U., Isupov, M., Lindqvist, Y., Schneider, G., Tryggvason, K.

(1999) Science 284: 1667-1670

Released	1999-08-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (GELATINASE A) (protein)
Unique Ligands	CA, CL, NA, SO4, ZN

Explore in 3D

1CMI \| pdb_00001cmi	Download File View File

STRUCTURE OF THE HUMAN PIN/LC8 DIMER WITH A BOUND PEPTIDE

Liang, J., Guo, W., Jaffery, S., Snyder, S., Clardy, J.

(1999) Nat Struct Biol 6: 735-740

Released	2000-02-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Dynein light chain 1, cytoplasmic (protein) Nitric oxide synthase 1 (protein)

Explore in 3D

1CWU \| pdb_00001cwu	Download File View File

BRASSICA NAPUS ENOYL ACP REDUCTASE A138G MUTANT COMPLEXED WITH NAD+ AND THIENODIAZABORINE

Roujeinikova, A., Rafferty, J.B., Rice, D.W.

(1999) J Biological Chem 274: 30811-30817

Released	1999-09-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Brassica napus
Macromolecule	ENOYL ACP REDUCTASE (protein)
Unique Ligands	NAD, TDB

Explore in 3D

1DD1 \| pdb_00001dd1	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE SMAD4 ACTIVE FRAGMENT

Qin, B.Y., Lam, S.W., Lin, K.

(1999) Structure 7: 1493-1503

Released	1999-11-27
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens
Macromolecule	SMAD4 (protein)
Unique Ligands	SO4

Explore in 3D

1DOL \| pdb_00001dol	Download File View File

MONOCYTE CHEMOATTRACTANT PROTEIN 1, I-FORM

Lubkowski, J., Bujacz, G., Boque, L., Wlodawer, A.

(1997) Nat Struct Biol 4: 64-69

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	MONOCYTE CHEMOATTRACTANT PROTEIN 1 (protein)

Explore in 3D

1DR9 \| pdb_00001dr9	Download File View File

CRYSTAL STRUCTURE OF A SOLUBLE FORM OF B7-1 (CD80)

Ikemizu, S., Jones, E.Y., Stuart, D.I., Davis, S.J.

(2000) Immunity 12: 51-60

Released	2000-01-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	T LYMPHOCYTE ACTIVATION ANTIGEN (protein)
Unique Ligands	NAG

Explore in 3D

1EJM \| pdb_00001ejm	Download File View File

CRYSTAL STRUCTURE OF THE BPTI ALA16LEU MUTANT IN COMPLEX WITH BOVINE TRYPSIN

Otlewski, J., Smalas, A., Helland, R., Grzesiak, A., Krowarsch, D.

(2000) J Mol Biology 301: 205-217

Released	2001-03-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bos taurus
Macromolecule	BETA-TRYPSIN (protein) PANCREATIC TRYPSIN INHIBITOR (protein)
Unique Ligands	SO4

Explore in 3D

1F8W \| pdb_00001f8w	Download File View File

CRYSTAL STRUCTURE OF NADH PEROXIDASE MUTANT: R303M

Yeh, J.I., Claiborne, A., Hol, W.G.J.

(2000) Biochemistry 39: 10353-10364

Released	2001-02-05
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD

Explore in 3D

1F9J \| pdb_00001f9j	Download File View File

STRUCTURE OF A NEW CRYSTAL FORM OF TETRAUBIQUITIN

Phillips, C.L., Thrower, J., Pickart, C.M., Hill, C.P.

(2001) Acta Crystallogr D Biol Crystallogr 57: 341-344

Released	2001-02-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	TETRAUBIQUITIN (protein)

Explore in 3D

1FHE \| pdb_00001fhe	Download File View File

GLUTATHIONE TRANSFERASE (FH47) FROM FASCIOLA HEPATICA

Rossjohn, J., Parker, M.W.

(1997) J Mol Biology 273: 857-872

Released	1998-07-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Fasciola hepatica
Macromolecule	GLUTATHIONE TRANSFERASE (protein)
Unique Ligands	GSH

Explore in 3D

1FN4 \| pdb_00001fn4	Download File View File

CRYSTAL STRUCTURE OF FAB198, AN EFFICIENT PROTECTOR OF ACETYLCHOLINE RECEPTOR AGAINST MYASTHENOGENIC ANTIBODIES

Poulas, K., Eliopoulos, E., Vatzaki, E., Navaza, J., Kontou, M.

(2001) Eur J Biochem 268: 3685-3693

Released	2001-09-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	MONOCLONAL ANTIBODY AGAINST ACETYLCHOLINE RECEPTOR (protein)

Explore in 3D

1FPS \| pdb_00001fps	Download File View File

CRYSTAL STRUCTURE OF RECOMBINANT FARNESYL DIPHOSPHATE SYNTHASE AT 2.6 ANGSTROMS RESOLUTION

Tarshis, L.C., Yan, M., Poulter, C.D., Sacchettini, J.C.

(1994) Biochemistry 33: 10871-10877

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Gallus gallus
Macromolecule	FARNESYL DIPHOSPHATE SYNTHASE (protein)

Explore in 3D

1FS7 \| pdb_00001fs7	Download File View File

CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES

Einsle, O., Stach, P., Messerschmidt, A., Simon, J., Kroeger, A., Huber, R., Kroneck, P.M.H.

(2000) J Biological Chem 275: 39608-39616

Released	2001-01-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Wolinella succinogenes
Macromolecule	CYTOCHROME C NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CA, HEC, Y1

Explore in 3D

1FS8 \| pdb_00001fs8	Download File View File

CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES-SULFATE COMPLEX

Einsle, O., Stach, P., Messerschmidt, A., Simon, J., Kroeger, A., Huber, R., Kroneck, P.M.H.

(2000) J Biological Chem 275: 39608-39616

Released	2001-01-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Wolinella succinogenes
Macromolecule	CYTOCHROME C NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CA, HEC, SO4, Y1

Explore in 3D

1FS9 \| pdb_00001fs9	Download File View File

CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES-AZIDE COMPLEX

Einsle, O., Stach, P., Messerschmidt, A., Simon, J., Kroeger, A., Huber, R., Kroneck, P.M.H.

(2000) J Biological Chem 275: 39608-39616

Released	2001-01-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Wolinella succinogenes
Macromolecule	CYTOCHROME C NITRITE REDUCTASE (protein)
Unique Ligands	AZI, CA, HEC, Y1

Explore in 3D

1FTR \| pdb_00001ftr	Download File View File

FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE FROM METHANOPYRUS KANDLERI

Ermler, U., Merckel, M.C., Thauer, R.K., Shima, S.

(1997) Structure 5: 635-646

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanopyrus kandleri
Macromolecule	FORMYLMETHANOFURAN\:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE (protein)

1 to 25 of 1,065 Structures

Page 1 of 43

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A5Z | pdb_00001a5z

1A6I | pdb_00001a6i

1B55 | pdb_00001b55

1B89 | pdb_00001b89

1BCG | pdb_00001bcg

1BJZ | pdb_00001bjz

1BUO | pdb_00001buo

1BWN | pdb_00001bwn

1CD9 | pdb_00001cd9

1CK7 | pdb_00001ck7

1CMI | pdb_00001cmi

1CWU | pdb_00001cwu

1DD1 | pdb_00001dd1

1DOL | pdb_00001dol

1DR9 | pdb_00001dr9

1EJM | pdb_00001ejm

1F8W | pdb_00001f8w

1F9J | pdb_00001f9j

1FHE | pdb_00001fhe

1FN4 | pdb_00001fn4

1FPS | pdb_00001fps

1FS7 | pdb_00001fs7

1FS8 | pdb_00001fs8

1FS9 | pdb_00001fs9

1FTR | pdb_00001ftr