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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 21 2 21"

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Search Summary

This query matches 556 Structures.

Refinements

Structure Determination Methodology

experimental (556)

Scientific Name of Source Organism

	Homo sapiens (208)
	synthetic construct (39)
	Mus musculus (38)
	Escherichia coli (16)
	Human betacoronavirus 2c EMC/2012 (12)
	Arabidopsis thaliana (11)
	Pseudomonas aeruginosa (11)
	Aliarcobacter butzleri RM4018 (10)
	Erythrobacter longus (8)
	Plasmodium falciparum 3D7 (8)

More...

Taxonomy

	Eukaryota (334)
	Bacteria (184)
	Riboviria (41)
	other sequences (39)
	Archaea (7)
	Duplodnaviria (6)
	Monodnaviria (1)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (556)

Polymer Entity Type

	Protein (550)
	DNA (16)
	RNA (8)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (58)
	1.5 - 2.0 (166)
	2.0 - 2.5 (148)
	2.5 - 3.0 (108)
	3.0 - 3.5 (51)
	3.5 - 4.0 (16)
	4.0 - 4.5 (2)

Release Date

	1975 - 1979 (1)
	1980 - 1984 (1)
	1985 - 1989 (2)
	1990 - 1994 (1)
	1995 - 1999 (6)
	2000 - 2004 (2)
	2005 - 2009 (3)
	2010 - 2014 (81)
	2015 - 2019 (191)
	2020 - 2024 (258)

More...

Enzyme Classification Name

	Transferases (92)
	Hydrolases (79)
	Oxidoreductases (30)
	Lyases (15)
	Isomerases (7)
	Ligases (5)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (54)
	mpstruc (48)
	MemProtMD (45)
	OPM (36)

Symmetry Type

	Asymmetric (355)
	Cyclic (139)
	Dihedral (66)
	Icosahedral (4)
	Helical (1)

SCOP Classification

	All beta proteins (61)
	Alpha and beta proteins (a/b) (78)
	Alpha and beta proteins (a+b) (37)
	Artifacts (25)
	All alpha proteins (20)
	Small proteins (19)
	Membrane and cell surface proteins and peptides (4)
	Coiled coil proteins (3)
	Multi-domain proteins (alpha and beta) (5)

AllSelected

1 to 25 of 556 Structures

Page 1 of 23

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1AFV \| pdb_00001afv	Download File View File

HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3

Momany, C., Kovari, L.C., Prongay, A.J., Keller, W., Gitti, R.K., Lee, B.M., Gorbalenya, A.E., Tong, L., Mcclure, J., Ehrlich, L.S., Summers, M.F., Carter, C., Rossmann, M.G.

(1996) Nat Struct Biol 3: 763-770

Released	1997-08-20
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Human immunodeficiency virus 1 Mus musculus
Macromolecule	ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) (protein) ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) (protein) HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN (protein)
Unique Ligands	PB

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1AKE \| pdb_00001ake	Download File View File

STRUCTURE OF THE COMPLEX BETWEEN ADENYLATE KINASE FROM ESCHERICHIA COLI AND THE INHIBITOR AP5A REFINED AT 1.9 ANGSTROMS RESOLUTION: A MODEL FOR A CATALYTIC TRANSITION STATE

Mueller, C.W., Schulz, G.E.

(1992) J Mol Biology 224: 159-177

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	ADENYLATE KINASE (protein)
Unique Ligands	AP5

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1CN1 \| pdb_00001cn1	Download File View File

CRYSTAL STRUCTURE OF DEMETALLIZED CONCANAVALIN A. THE METAL-BINDING REGION

Shoham, M., Yonath, A., Sussman, J.L., Moult, J., Traub, W., Gilboa(Kalb), A.J.

(1979) J Mol Biology 131: 137-155

Released	1982-03-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Canavalia ensiformis
Macromolecule	CONCANAVALIN A (protein)

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1E4V \| pdb_00001e4v	Download File View File

Mutant G10V of adenylate kinase from E. coli, modified in the Gly-loop

Mueller, C.W., Schulz, G.E.

(1993) Proteins 15: 42-49

Released	2000-08-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	Adenylate kinase (protein)
Unique Ligands	AP5

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1IAI \| pdb_00001iai	Download File View File

IDIOTYPE-ANTI-IDIOTYPE FAB COMPLEX

Ban, N., Escobar, C., Garcia, R., Hasel, K., Day, J., Greenwood, A., McPherson, A.

(1994) Proc Natl Acad Sci U S A 91: 1604-1608

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) (protein) IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY (protein)

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1JHG \| pdb_00001jhg	Download File View File

TRP REPRESSOR MUTANT V58I

Lawson, C.L.

(1996) Nat Struct Biol 3: 986-987

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Escherichia coli
Macromolecule	TRP OPERON REPRESSOR (protein)
Unique Ligands	PO4, TRP

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1LBH \| pdb_00001lbh	Download File View File

INTACT LACTOSE OPERON REPRESSOR WITH GRATUITOUS INDUCER IPTG

Lewis, M., Chang, G., Horton, N.C., Kercher, M.A., Pace, H.C., Lu, P.

(1996) Science 271: 1247-1254

Released	1996-07-11
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	INTACT LACTOSE OPERON REPRESSOR WITH GRATUITOUS INDUCER IPTG (protein)
Unique Ligands	IPT

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1RHI \| pdb_00001rhi	Download File View File

HUMAN RHINOVIRUS 3 COAT PROTEIN

Zhao, R., Rossmann, M.G.

(1996) Structure 4: 1205-1220

Released	1997-03-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	rhinovirus B3
Macromolecule	HUMAN RHINOVIRUS 3 COAT PROTEIN (protein)
Unique Ligands	CA

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1V9U \| pdb_00001v9u	Download File View File

Human Rhinovirus 2 bound to a fragment of its cellular receptor protein

Verdaguer, N., Fita, I., Reithmayer, M., Moser, R., Blaas, D.

(2004) Nat Struct Mol Biol 11: 429-434

Released	2004-05-04
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens rhinovirus A2
Macromolecule	Coat protein VP1 (protein) Coat protein VP2 (protein) Coat protein VP3 (protein) Coat protein VP4 (protein) LDL-receptor class A 3 (protein)
Unique Ligands	CA, DAO

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2WPO \| pdb_00002wpo	Download File View File

HCMV protease inhibitor complex

Tong, L., Qian, C., Massariol, M.-J., Deziel, R., Yoakim, C., Lagace, L.

(1998) Nat Struct Biol 5: 819-826

Released	1999-08-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Human betaherpesvirus 5
Macromolecule	HUMAN CYTOMEGALOVIRUS PROTEASE (protein)
Unique Ligands	01E

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3GM3 \| pdb_00003gm3	Download File View File

Crystal Structure of the Focal Adhesion Targeting (FAT) Domain of Pyk2

Lulo, J.E., Yuzawa, S., Schlessinger, J.

(2009) Biochem Biophys Res Commun 383: 347-352

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Protein tyrosine kinase 2 beta (protein)

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3HLT \| pdb_00003hlt	Download File View File

The crystal structure of human haloacid dehalogenase-like hydrolase domain containing 2 (HDHD2)

Ugochukwu, E., Shafqat, N., Yue, W.W., Cocking, R., Bray, J.E., Muniz, J.R.C., Krojer, T., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Oppermann, U., Structural Genomics Consortium (SGC)

To be published

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	HDHD2 (protein)
Unique Ligands	CL, NA, SO4

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3IOL \| pdb_00003iol	Download File View File

Crystal structure of Glucagon-Like Peptide-1 in complex with the extracellular domain of the Glucagon-Like Peptide-1 Receptor

Reedtz-Runge, S.

(2010) J Biological Chem 285: 723-730

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Glucagon (protein) Glucagon-like peptide 1 receptor (protein)
Unique Ligands	10M

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3IXL \| pdb_00003ixl	Download File View File

Crystal structure of the Gly74Cys-Cys188Ser mutant of arylmalonate decarboxylase in the liganded form

Nakasako, M., Obata, R.

(2010) Biochemistry 49: 1963-1969

Released	2010-02-23
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Bordetella bronchiseptica
Macromolecule	Arylmalonate decarboxylase (protein)
Unique Ligands	GOL, PAC, SO4

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3L4J \| pdb_00003l4j	Download File View File

Topoisomerase II-DNA cleavage complex, apo

Schmidt, B.H., Burgin, A.B., Deweese, J.E., Osheroff, N., Berger, J.M.

(2010) Nature 465: 641-644

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA topoisomerase 2 (protein) DNA (5'-D(CPGPCPGPAPAPTPCPGPTPCPAPTPCPC)-3') (nucleic acid) DNA (5'-D(CPGPCPGPGPTPAPGPCPAPGPTPAPGPG)-3') (nucleic acid) DNA (5'-D(PCPCPTPAPCPTPGPCPTPAPC)-3') (nucleic acid) DNA (5'-D(PGPGPAPTPGPAPCPGPAPTP)-3') (nucleic acid)
Unique Ligands	TSP

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3L4K \| pdb_00003l4k	Download File View File

Topoisomerase II-DNA cleavage complex, metal-bound

Schmidt, B.H., Burgin, A.B., Deweese, J.E., Osheroff, N., Berger, J.M.

(2010) Nature 465: 641-644

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA topoisomerase 2 (protein) DNA (5'-D(CPGPCPGPAPAPTPCPGPTPCPAPTPCPC)-3') (nucleic acid) DNA (5'-D(CPGPCPGPGPTPAPGPCPAPGPTPAPGPG)-3') (nucleic acid) DNA (5'-D(PCPCPTPAPCPTPGPCPTPAPC)-3') (nucleic acid) DNA (5'-D(PGPGPAPTPGPAPCPGPAPTP)-3') (nucleic acid)
Unique Ligands	TSP, ZN

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3N7H \| pdb_00003n7h	Download File View File

Crystal structure of Odorant Binding Protein 1 from Anopheles gambiae (AgamOBP1) with DEET (N,N-Diethyl-meta-toluamide) and PEG

Tsitsanou, K.E., Zographos, S.E.

(2012) Cell Mol Life Sci 69: 283-297

Released	2011-06-08
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Anopheles gambiae
Macromolecule	Odorant binding protein (protein)
Unique Ligands	CL, DE3, MG, MOH, PEU

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3N7X \| pdb_00003n7x	Download File View File

Crystal structure of Penaeus stylirostris densovirus capsid

Kaufmann, B., Rossmann, M.G.

(2010) J Virol 84: 11289-11296

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Decapod penstyldensovirus 1
Macromolecule	Capsid protein (protein)
Unique Ligands	CA, MG

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3NEI \| pdb_00003nei	Download File View File

Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus (no SAH bound)

Seyedarabi, A., Pickersgill, R.W.

To be published

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rhodobacter capsulatus SB 1003
Macromolecule	Precorrin-4 C(11)-methyltransferase (protein)
Unique Ligands	GOL, SO4

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3OJB \| pdb_00003ojb	Download File View File

Crystal structure of C-terminal domain of human galectin-8

Zhou, D., Teng, M., Niu, L.

To be published

Released	2011-09-07
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Homo sapiens
Macromolecule	Galectin-8 (protein)

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3PSV \| pdb_00003psv	Download File View File

Structure of E97D mutant of TIM from Plasmodium falciparum

Samanta, M., Murthy, M.R.N., Balaram, H., Balaram, P.

(2011) Chembiochem 12: 1886-1896

Released	2011-10-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium falciparum
Macromolecule	Triosephosphate isomerase (protein)
Unique Ligands	EDO, SO4

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3PSW \| pdb_00003psw	Download File View File

Structure of E97Q mutant of TIM from Plasmodium falciparum

Samanta, M., Murthy, M.R.N., Balaram, H., Balaram, P.

(2011) Chembiochem 12: 1886-1896

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Plasmodium falciparum
Macromolecule	Triosephosphate isomerase (protein)
Unique Ligands	EDO, SO4

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3QIV \| pdb_00003qiv	Download File View File

Crystal structure of a putative short-chain dehydrogenase or 3-oxoacyl-[acyl-carrier-protein] reductase from Mycobacterium paratuberculosis ATCC BAA-968 / K-10

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2015) Tuberculosis (Edinb) 95: 142-148

Released	2011-02-16
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium avium subsp. paratuberculosis
Macromolecule	short-chain dehydrogenase or 3-oxoacyl-[acyl-carrier-protein] reductase (protein)

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3RVL \| pdb_00003rvl	Download File View File

Structure of the CheY-BeF3 Complex with substitutions at 59 and 89: N59D and E89R

Starbird, C.A., Immormino, R.M., Silversmith, R.E., Bourret, R.B.

(2015) Biochemistry 54: 3514-3527

Released	2012-05-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein CheY (protein)
Unique Ligands	BEF, GOL, MN, SO4