Download MendeleyCrystal Structure of Cbpf in Complex with Atropine by Soaking
Silva-Martin, N., Hermoso, J.A., Sanz, J.M.To be published.
2X8O
Crystal Structure of CbpF in complex with Atropine by soaking
- PDB DOI: https://doi.org/10.2210/pdb2X8O/pdb
- Classification: CHOLINE-BINDING PROTEIN
- Organism(s): Streptococcus pneumoniae R6
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-03-10 Released: 2011-04-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.260
- R-Value Work: 0.222
- R-Value Observed: 0.222
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CHOLINE-BINDING PROTEIN F | 311 | Streptococcus pneumoniae R6 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q8DR52 (Streptococcus pneumoniae (strain ATCC BAA-255 / R6)) Explore Q8DR52 Go to UniProtKB: Q8DR52 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8DR52 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| OIN Query on OIN | D [auth A], G [auth A] | (1R,5S)-8-METHYL-8-AZABICYCLO[3.2.1]OCT-3-YL (2R)-3-HYDROXY-2-PHENYLPROPANOATE C17 H23 N O3 RKUNBYITZUJHSG-QKPAOTATSA-N |  | ||
| CHT Query on CHT | B [auth A] H [auth A] I [auth A] L [auth A] M [auth A] | CHOLINE ION C5 H14 N O OEYIOHPDSNJKLS-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | E [auth A], F [auth A], J [auth A], K [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.260
- R-Value Work: 0.222
- R-Value Observed: 0.222
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.409 | α = 90 |
| b = 116.752 | β = 90 |
| c = 73.889 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| XDS | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2011-04-06 Deposition Author(s): Silva-Martin, N., Hermoso, J.A.
Revision History (Full details and data files)
- Version 1.0: 2011-04-06
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
