2Y0K

Crystal Structure of Pseudomonas Aeruginosa OpdO

• PDB DOI: https://doi.org/10.2210/pdb2Y0K/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Pseudomonas aeruginosa PAO1
• Expression System: Escherichia coli BL21
• Mutation(s): No 
• Membrane Protein: Yes  OPMPDBTMMemProtMD


• Deposited: 2010-12-03 Released: 2011-12-21 
• Deposition Author(s): Touw, D.S., Vijayaraghavan, J., Vandenberg, B.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.29 Å
• R-Value Free: 0.243 
• R-Value Work: 0.196 
• R-Value Observed: 0.200 

Starting Model: experimental

Literature

Crystal Structure of Pseudomonas Aeruginosa Opdo

Touw, D.S., Vijayaraghavan, J., Vandenberg, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 46.05 kDa 
• Atom Count: 3,141 
• Modelled Residue Count: 364 
• Deposited Residue Count: 390 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PYROGLUTATMATE PORIN OPDO	A	390	Pseudomonas aeruginosa PAO1	Mutation(s): 0  Membrane Entity: Yes
UniProt
Find proteins for Q9I202 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I202  Go to UniProtKB:  Q9I202

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
C8E	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], L [auth A]	(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE C16 H34 O5 FEOZZFHAVXYAMB-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.29 Å
• R-Value Free: 0.243 
• R-Value Work: 0.196 
• R-Value Observed: 0.200 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 149.455	α = 90
b = 78.929	β = 91.19
c = 50.761	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-12-21 
Deposition Author(s): Touw, D.S., Vijayaraghavan, J., Vandenberg, B.

Revision History  

• Version 1.0: 2011-12-21
  Type: Initial release
  
• Version 1.1: 2023-12-20
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description