Atomic-level structure of the entire HIV-1 capsid

Experimental Data Snapshot

  • Aggregation State: PARTICLE 
  • Reconstruction Method: TOMOGRAPHY 

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Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.

Zhao, G.Perilla, J.R.Yufenyuy, E.L.Meng, X.Chen, B.Ning, J.Ahn, J.Gronenborn, A.M.Schulten, K.Aiken, C.Zhang, P.

(2013) Nature 497: 643-646

  • DOI: https://doi.org/10.1038/nature12162
  • Primary Citation of Related Structures:  
    3J34, 3J3Q, 3J3Y, 3J4F

  • PubMed Abstract: 
  • Retroviral capsid proteins are conserved structurally but assemble into different morphologies. The mature human immunodeficiency virus-1 (HIV-1) capsid is best described by a 'fullerene cone' model, in which hexamers of the capsid protein are linked to form a hexagonal surface lattice that is closed by incorporating 12 capsid-protein pentamers ...

    Retroviral capsid proteins are conserved structurally but assemble into different morphologies. The mature human immunodeficiency virus-1 (HIV-1) capsid is best described by a 'fullerene cone' model, in which hexamers of the capsid protein are linked to form a hexagonal surface lattice that is closed by incorporating 12 capsid-protein pentamers. HIV-1 capsid protein contains an amino-terminal domain (NTD) comprising seven α-helices and a β-hairpin, a carboxy-terminal domain (CTD) comprising four α-helices, and a flexible linker with a 310-helix connecting the two structural domains. Structures of the capsid-protein assembly units have been determined by X-ray crystallography; however, structural information regarding the assembled capsid and the contacts between the assembly units is incomplete. Here we report the cryo-electron microscopy structure of a tubular HIV-1 capsid-protein assembly at 8 Å resolution and the three-dimensional structure of a native HIV-1 core by cryo-electron tomography. The structure of the tubular assembly shows, at the three-fold interface, a three-helix bundle with critical hydrophobic interactions. Mutagenesis studies confirm that hydrophobic residues in the centre of the three-helix bundle are crucial for capsid assembly and stability, and for viral infectivity. The cryo-electron-microscopy structures enable modelling by large-scale molecular dynamics simulation, resulting in all-atom models for the hexamer-of-hexamer and pentamer-of-hexamer elements as well as for the entire capsid. Incorporation of pentamers results in closer trimer contacts and induces acute surface curvature. The complete atomic HIV-1 capsid model provides a platform for further studies of capsid function and for targeted pharmacological intervention.

    Organizational Affiliation

    Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
capsid protein
A [auth g8],
AA [auth gw],
AAA [auth 7c],
AB [auth gU],
ABA [auth 7C],
AC [auth hh],
ACA [auth 82],
AD [auth hF],
ADA [auth 8s],
AE [auth i3],
AEA [auth 8S],
AF [auth iq],
AFA [auth 9i],
AG [auth iO],
AGA [auth 9I],
AH [auth 1U],
AHA [auth a6],
AI [auth jz],
AIA [auth 12],
AJ [auth jX],
AJA [auth aR],
AK [auth kk],
AKA [auth bf],
AL [auth kI],
ALA [auth bC],
AM [auth l6],
AMA [auth c0],
AN [auth lt],
ANA [auth co],
AO [auth lR],
AOA [auth cL],
AP [auth 2A],
APA [auth d9],
AQ [auth 30],
AQA [auth dx],
AR [auth 3q],
ARA [auth dU],
AS [auth 3Q],
ASA [auth ei],
AT [auth 4g],
ATA [auth 1s],
AU [auth 4G],
AUA [auth f3],
AV [auth 56],
AVA [auth fr],
AW [auth 5w],
AWA [auth fO],
AX [auth 5W],
AXA [auth d],
AY [auth 6m],
AYA [auth B],
AZ [auth 6M],
AZA [auth 6],
B [auth g9],
BA [auth gx],
BAA [auth 7d],
BB [auth gV],
BBA [auth 7D],
BC [auth hi],
BCA [auth 83],
BD [auth hG],
BDA [auth 8t],
BE [auth 1N],
BEA [auth 8T],
BF [auth ir],
BFA [auth 9j],
BG [auth iP],
BGA [auth 9J],
BH [auth jc],
BHA [auth a7],
BI [auth jA],
BIA [auth au],
BJ [auth jY],
BJA [auth aS],
BK [auth kl],
BKA [auth bg],
BL [auth kJ],
BLA [auth bD],
BM [auth l7],
BMA [auth c1],
BN [auth lu],
BNA [auth cp],
BO [auth 2b],
BOA [auth cM],
BP [auth 2B],
BPA [auth da],
BQ [auth 31],
BQA [auth 1l],
BR [auth 3r],
BRA [auth dV],
BS [auth 3R],
BSA [auth ej],
BT [auth 4h],
BTA [auth eG],
BU [auth 4H],
BUA [auth f4],
BV [auth 57],
BVA [auth fs],
BW [auth 5x],
BWA [auth fP],
BX [auth 5X],
BXA [auth e],
BY [auth 6n],
BYA [auth C],
BZ [auth 6N],
BZA [auth 7],
C [auth ga],
CA [auth gy],
CAA [auth 7e],
CB [auth 1G],
CBA [auth 7E],
CC [auth hj],
CCA [auth 84],
CD [auth hH],
CDA [auth 8u],
CE [auth i4],
CEA [auth 8U],
CF [auth is],
CFA [auth 9k],
CG [auth iQ],
CGA [auth 9K],
CH [auth jd],
CHA [auth a8],
CI [auth jB],
CIA [auth av],
CJ [auth jZ],
CJA [auth aT],
CK [auth km],
CKA [auth bh],
CL [auth kK],
CLA [auth bE],
CM [auth 26],
CMA [auth c2],
CN [auth lv],
CNA [auth 1e],
CO [auth 2c],
COA [auth cN],
CP [auth 2C],
CPA [auth db],
CQ [auth 32],
CQA [auth dy],
CR [auth 3s],
CRA [auth dW],
CS [auth 3S],
CSA [auth ek],
CT [auth 4i],
CTA [auth eH],
CU [auth 4I],
CUA [auth f5],
CV [auth 58],
CVA [auth ft],
CW [auth 5y],
CWA [auth fQ],
CX [auth 5Y],
CXA [auth f],
CY [auth 6o],
CYA [auth D],
CZ [auth 6O],
CZA [auth 8],
D [auth gb],
DA [auth gz],
DAA [auth 7f],
DB [auth gW],
DBA [auth 7F],
DC [auth hk],
DCA [auth 85],
DD [auth hI],
DDA [auth 8v],
DE [auth i5],
DEA [auth 8V],
DF [auth it],
DFA [auth 9l],
DG [auth iR],
DGA [auth 9L],
DH [auth je],
DHA [auth a9],
DI [auth jC],
DIA [auth aw],
DJ [auth 1Z],
DJA [auth aU],
DK [auth kn],
DKA [auth 17],
DL [auth kL],
DLA [auth bF],
DM [auth l8],
DMA [auth c3],
DN [auth lw],
DNA [auth cq],
DO [auth 2d],
DOA [auth cO],
DP [auth 2D],
DPA [auth dc],
DQ [auth 33],
DQA [auth dz],
DR [auth 3t],
DRA [auth dX],
DS [auth 3T],
DSA [auth el],
DT [auth 4j],
DTA [auth eI],
DU [auth 4J],
DUA [auth f6],
DV [auth 59],
DVA [auth 1x],
DW [auth 5z],
DWA [auth fR],
DX [auth 5Z],
DXA [auth g],
DY [auth 6p],
DYA [auth 3],
DZ [auth 6P],
DZA [auth 9],
E [auth gc],
EA [auth gA],
EAA [auth 7g],
EB [auth gX],
EBA [auth 7G],
EC [auth hl],
ECA [auth 86],
ED [auth hJ],
EDA [auth 8w],
EE [auth i6],
EEA [auth 8W],
EF [auth iu],
EFA [auth 9m],
EG [auth 1S],
EGA [auth 9M],
EH [auth jf],
EHA [auth 10],
EI [auth jD],
EIA [auth ax],
EJ [auth k0],
EJA [auth aV],
EK [auth ko],
EKA [auth bi],
EL [auth kM],
ELA [auth bG],
EM [auth l9],
EMA [auth c4],
EN [auth lx],
ENA [auth cr],
EO [auth 2e],
EOA [auth cP],
EP [auth 2E],
EPA [auth dd],
EQ [auth 34],
EQA [auth dA],
ER [auth 3u],
ERA [auth dY],
ES [auth 3U],
ESA [auth 1q],
ET [auth 4k],
ETA [auth eJ],
EU [auth 4K],
EUA [auth f7],
EV [auth 5a],
EVA [auth fu],
EW [auth 5A],
EWA [auth fS],
EX [auth 60],
EXA [auth h],
EY [auth 6q],
EYA [auth E],
EZ [auth 6Q],
F [auth gd],
FA [auth gB],
FAA [auth 7h],
FB [auth gY],
FBA [auth 7H],
FC [auth hm],
FCA [auth 87],
FD [auth 1L],
FDA [auth 8x],
FE [auth i7],
FEA [auth 8X],
FF [auth iv],
FFA [auth 9n],
FG [auth iS],
FGA [auth 9N],
FH [auth jg],
FHA [auth aa],
FI [auth jE],
FIA [auth ay],
FJ [auth k1],
FJA [auth aW],
FK [auth kp],
FKA [auth bj],
FL [auth kN],
FLA [auth bH],
FM [auth la],
FMA [auth c5],
FN [auth ly],
FNA [auth cs],
FO [auth 2f],
FOA [auth cQ],
FP [auth 2F],
FPA [auth 1j],
FQ [auth 35],
FQA [auth dB],
FR [auth 3v],
FRA [auth dZ],
FS [auth 3V],
FSA [auth em],
FT [auth 4l],
FTA [auth eK],
FU [auth 4L],
FUA [auth f8],
FV [auth 5b],
FVA [auth fv],
FW [auth 5B],
FWA [auth fT],
FX [auth 61],
FXA [auth i],
FY [auth 6r],
FYA [auth F],
FZ [auth 6R],
G [auth ge],
GA [auth 1E],
GAA [auth 7i],
GB [auth gZ],
GBA [auth 7I],
GC [auth hn],
GCA [auth 88],
GD [auth hK],
GDA [auth 8y],
GE [auth i8],
GEA [auth 8Y],
GF [auth iw],
GFA [auth 9o],
GG [auth iT],
GGA [auth 9O],
GH [auth jh],
GHA [auth ab],
GI [auth jF],
GIA [auth az],
GJ [auth k2],
GJA [auth aX],
GK [auth kq],
GKA [auth bk],
GL [auth 24],
GLA [auth bI],
GM [auth lb],
GMA [auth 1c],
GN [auth lz],
GNA [auth ct],
GO [auth 2g],
GOA [auth cR],
GP [auth 2G],
GPA [auth de],
GQ [auth 36],
GQA [auth dC],
GR [auth 3w],
GRA [auth e0],
GS [auth 3W],
GSA [auth en],
GT [auth 4m],
GTA [auth eL],
GU [auth 4M],
GUA [auth f9],
GV [auth 5c],
GVA [auth fw],
GW [auth 5C],
GWA [auth fU],
GX [auth 62],
GXA [auth j],
GY [auth 6s],
GYA [auth G],
GZ [auth 6S],
H [auth gf],
HA [auth gC],
HAA [auth 7j],
HB [auth h0],
HBA [auth 7J],
HC [auth ho],
HCA [auth 89],
HD [auth hL],
HDA [auth 8z],
HE [auth i9],
HEA [auth 8Z],
HF [auth ix],
HFA [auth 9p],
HG [auth iU],
HGA [auth 9P],
HH [auth ji],
HHA [auth ac],
HI [auth 1X],
HIA [auth aA],
HJ [auth k3],
HJA [auth 15],
HK [auth kr],
HKA [auth bl],
HL [auth kO],
HLA [auth bJ],
HM [auth lc],
HMA [auth c6],
HN [auth lA],
HNA [auth cu],
HO [auth 2h],
HOA [auth cS],
HP [auth 2H],
HPA [auth df],
HQ [auth 37],
HQA [auth dD],
HR [auth 3x],
HRA [auth e1],
HS [auth 3X],
HSA [auth eo],
HT [auth 4n],
HTA [auth eM],
HU [auth 4N],
HUA [auth 1v],
HV [auth 5d],
HVA [auth fx],
HW [auth 5D],
HWA [auth fV],
HX [auth 63],
HXA [auth 1],
HY [auth 6t],
HYA [auth H],
HZ [auth 6T],
I [auth gg],
IA [auth gD],
IAA [auth 7k],
IB [auth h1],
IBA [auth 7K],
IC [auth hp],
ICA [auth 8a],
ID [auth hM],
IDA [auth 8A],
IE [auth ia],
IEA [auth 90],
IF [auth 1Q],
IFA [auth 9q],
IG [auth iV],
IGA [auth Y],
IH [auth jj],
IHA [auth ad],
II [auth jG],
IIA [auth aB],
IJ [auth k4],
IJA [auth aY],
IK [auth ks],
IKA [auth bm],
IL [auth kP],
ILA [auth bK],
IM [auth ld],
IMA [auth c7],
IN [auth lB],
INA [auth cv],
IO [auth 2i],
IOA [auth cT],
IP [auth 2I],
IPA [auth dg],
IQ [auth 38],
IQA [auth dE],
IR [auth 3y],
IRA [auth 1o],
IS [auth 3Y],
ISA [auth ep],
IT [auth 4o],
ITA [auth eN],
IU [auth 4O],
IUA [auth fa],
IV [auth 5e],
IVA [auth fy],
IW [auth 5E],
IWA [auth fW],
IX [auth 64],
IXA [auth k],
IY [auth 6u],
IYA [auth I],
IZ [auth 6U],
J [auth gh],
JA [auth gE],
JAA [auth 7l],
JB [auth h2],
JBA [auth 7L],
JC [auth 1J],
JCA [auth 8b],
JD [auth hN],
JDA [auth 8B],
JE [auth ib],
JEA [auth 91],
JF [auth iy],
JFA [auth 9r],
JG [auth iW],
JGA [auth 9Q],
JH [auth jk],
JHA [auth ae],
JI [auth jH],
JIA [auth aC],
JJ [auth k5],
JJA [auth aZ],
JK [auth kt],
JKA [auth bn],
JL [auth kQ],
JLA [auth bL],
JM [auth le],
JMA [auth c8],
JN [auth 29],
JNA [auth cw],
JO [auth 2j],
JOA [auth 1h],
JP [auth 2J],
JPA [auth dh],
JQ [auth 39],
JQA [auth dF],
JR [auth 3z],
JRA [auth e2],
JS [auth 3Z],
JSA [auth eq],
JT [auth 4p],
JTA [auth eO],
JU [auth 4P],
JUA [auth fb],
JV [auth 5f],
JVA [auth fz],
JW [auth 5F],
JWA [auth fX],
JX [auth 65],
JXA [auth l],
JY [auth 6v],
JYA [auth J],
JZ [auth 6V],
K [auth 1C],
KA [auth gF],
KAA [auth 7m],
KB [auth h3],
KBA [auth 7M],
KC [auth hq],
KCA [auth 8c],
KD [auth hO],
KDA [auth 8C],
KE [auth ic],
KEA [auth 92],
KF [auth iz],
KFA [auth 9s],
KG [auth iX],
KGA [auth 9R],
KH [auth jl],
KHA [auth af],
KI [auth jI],
KIA [auth aD],
KJ [auth k6],
KJA [auth b0],
KK [auth 22],
KKA [auth bo],
KL [auth kR],
KLA [auth 1a],
KM [auth lf],
KMA [auth c9],
KN [auth lC],
KNA [auth cx],
KO [auth 2k],
KOA [auth cU],
KP [auth 2K],
KPA [auth di],
KQ [auth 3a],
KQA [auth dG],
KR [auth 3A],
KRA [auth e3],
KS [auth 40],
KSA [auth er],
KT [auth 4q],
KTA [auth eP],
KU [auth 4Q],
KUA [auth fc],
KV [auth 5g],
KVA [auth fA],
KW [auth 5G],
KWA [auth 1A],
KX [auth 66],
KXA [auth m],
KY [auth 6w],
KYA [auth K],
KZ [auth 6W],
L [auth gi],
LA [auth gG],
LAA [auth 7n],
LB [auth h4],
LBA [auth 7N],
LC [auth hr],
LCA [auth 8d],
LD [auth hP],
LDA [auth 8D],
LE [auth id],
LEA [auth 93],
LF [auth iA],
LFA [auth 9t],
LG [auth iY],
LGA [auth 9S],
LH [auth 1V],
LHA [auth ag],
LI [auth jJ],
LIA [auth 13],
LJ [auth k7],
LJA [auth b1],
LK [auth ku],
LKA [auth bp],
LL [auth kS],
LLA [auth bM],
LM [auth lg],
LMA [auth ca],
LN [auth lD],
LNA [auth cy],
LO [auth 2l],
LOA [auth cV],
LP [auth 2L],
LPA [auth dj],
LQ [auth 3b],
LQA [auth dH],
LR [auth 3B],
LRA [auth e4],
LS [auth 41],
LSA [auth es],
LT [auth 4r],
LTA [auth 1t],
LU [auth 4R],
LUA [auth fd],
LV [auth 5h],
LVA [auth fB],
LW [auth 5H],
LWA [auth fY],
LX [auth 67],
LXA [auth n],
LY [auth 6x],
LYA [auth L],
LZ [auth 6X],
M [auth gj],
MA [auth gH],
MAA [auth 7o],
MB [auth h5],
MBA [auth 7O],
MC [auth hs],
MCA [auth 8e],
MD [auth hQ],
MDA [auth 8E],
ME [auth 1O],
MEA [auth 94],
MF [auth iB],
MFA [auth 9u],
MG [auth iZ],
MGA [auth 9T],
MH [auth jm],
MHA [auth ah],
MI [auth jK],
MIA [auth aE],
MJ [auth k8],
MJA [auth b2],
MK [auth kv],
MKA [auth bq],
ML [auth kT],
MLA [auth bN],
MM [auth lh],
MMA [auth cb],
MN [auth lE],
MNA [auth cz],
MO [auth 2m],
MOA [auth cW],
MP [auth 2M],
MPA [auth dk],
MQ [auth 3c],
MQA [auth 1m],
MR [auth 3C],
MRA [auth e5],
MS [auth 42],
MSA [auth et],
MT [auth 4s],
MTA [auth eQ],
MU [auth 4S],
MUA [auth fe],
MV [auth 5i],
MVA [auth fC],
MW [auth 5I],
MWA [auth fZ],
MX [auth 68],
MXA [auth o],
MY [auth 6y],
MYA [auth M],
MZ [auth 6Y],
N [auth gk],
NA [auth gI],
NAA [auth 7p],
NB [auth 1H],
NBA [auth 7P],
NC [auth ht],
NCA [auth 8f],
ND [auth hR],
NDA [auth 8F],
NE [auth ie],
NEA [auth 95],
NF [auth iC],
NFA [auth 9v],
NG [auth j0],
NGA [auth 9U],
NH [auth jn],
NHA [auth ai],
NI [auth jL],
NIA [auth aF],
NJ [auth k9],
NJA [auth b3],
NK [auth kw],
NKA [auth br],
NL [auth kU],
NLA [auth bO],
NM [auth 27],
NMA [auth cc],
NN [auth lF],
NNA [auth 1f],
NO [auth 2n],
NOA [auth cX],
NP [auth 2N],
NPA [auth dl],
NQ [auth 3d],
NQA [auth dI],
NR [auth 3D],
NRA [auth e6],
NS [auth 43],
NSA [auth eu],
NT [auth 4t],
NTA [auth eR],
NU [auth 4T],
NUA [auth ff],
NV [auth 5j],
NVA [auth fD],
NW [auth 5J],
NWA [auth g0],
NX [auth 69],
NXA [auth p],
NY [auth 6z],
NYA [auth N],
NZ [auth 6Z],
O [auth gl],
OA [auth gJ],
OAA [auth 7q],
OB [auth h6],
OBA [auth 7Q],
OC [auth hu],
OCA [auth 8g],
OD [auth hS],
ODA [auth 8G],
OE [auth if],
OEA [auth 96],
OF [auth iD],
OFA [auth 9w],
OG [auth j1],
OGA [auth 9V],
OH [auth jo],
OHA [auth aj],
OI [auth jM],
OIA [auth aG],
OJ [auth 20],
OJA [auth b4],
OK [auth kx],
OKA [auth 18],
OL [auth kV],
OLA [auth bP],
OM [auth li],
OMA [auth cd],
ON [auth lG],
ONA [auth cA],
OO [auth 2o],
OOA [auth cY],
OP [auth 2O],
OPA [auth dm],
OQ [auth 3e],
OQA [auth dJ],
OR [auth 3E],
ORA [auth e7],
OS [auth 44],
OSA [auth ev],
OT [auth 4u],
OTA [auth eS],
OU [auth 4U],
OUA [auth fg],
OV [auth 5k],
OVA [auth 1y],
OW [auth 5K],
OWA [auth g1],
OX [auth 6a],
OXA [auth q],
OY [auth 6A],
OYA [auth 4],
OZ [auth 70],
P [auth gm],
PA [auth gK],
PAA [auth 7r],
PB [auth h7],
PBA [auth 7R],
PC [auth hv],
PCA [auth 8h],
PD [auth hT],
PDA [auth 8H],
PE [auth ig],
PEA [auth 97],
PF [auth iE],
PFA [auth 9x],
PG [auth 1T],
PGA [auth 9W],
PH [auth jp],
PHA [auth 11],
PI [auth jN],
PIA [auth aH],
PJ [auth ka],
PJA [auth b5],
PK [auth ky],
PKA [auth bs],
PL [auth kW],
PLA [auth bQ],
PM [auth lj],
PMA [auth ce],
PN [auth lH],
PNA [auth cB],
PO [auth 2p],
POA [auth cZ],
PP [auth 2P],
PPA [auth dn],
PQ [auth 3f],
PQA [auth dK],
PR [auth 3F],
PRA [auth e8],
PS [auth 45],
PSA [auth 1r],
PT [auth 4v],
PTA [auth eT],
PU [auth 4V],
PUA [auth fh],
PV [auth 5l],
PVA [auth fE],
PW [auth 5L],
PWA [auth g2],
PX [auth 6b],
PXA [auth r],
PY [auth 6B],
PYA [auth O],
PZ [auth 71],
Q [auth gn],
QA [auth gL],
QAA [auth 7s],
QB [auth h8],
QBA [auth 7S],
QC [auth hw],
QCA [auth 8i],
QD [auth 1M],
QDA [auth 8I],
QE [auth ih],
QEA [auth 98],
QF [auth iF],
QFA [auth 9y],
QG [auth j2],
QGA [auth 9X],
QH [auth jq],
QHA [auth ak],
QI [auth jO],
QIA [auth aI],
QJ [auth kb],
QJA [auth b6],
QK [auth kz],
QKA [auth bt],
QL [auth kX],
QLA [auth bR],
QM [auth lk],
QMA [auth cf],
QN [auth lI],
QNA [auth cC],
QO [auth 2q],
QOA [auth d0],
QP [auth 2Q],
QPA [auth 1k],
QQ [auth 3g],
QQA [auth dL],
QR [auth 3G],
QRA [auth e9],
QS [auth 46],
QSA [auth ew],
QT [auth 4w],
QTA [auth eU],
QU [auth 4W],
QUA [auth fi],
QV [auth 5m],
QVA [auth fF],
QW [auth 5M],
QWA [auth g3],
QX [auth 6c],
QXA [auth s],
QY [auth 6C],
QYA [auth P],
QZ [auth 72],
R [auth go],
RA [auth 1F],
RAA [auth 7t],
RB [auth h9],
RBA [auth 7T],
RC [auth hx],
RCA [auth 8j],
RD [auth hU],
RDA [auth 8J],
RE [auth ii],
REA [auth 99],
RF [auth iG],
RFA [auth 9z],
RG [auth j3],
RGA [auth 9Y],
RH [auth jr],
RHA [auth al],
RI [auth jP],
RIA [auth aJ],
RJ [auth kc],
RJA [auth b7],
RK [auth kA],
RKA [auth bu],
RL [auth 25],
RLA [auth bS],
RM [auth ll],
RMA [auth 1d],
RN [auth lJ],
RNA [auth cD],
RO [auth 2r],
ROA [auth d1],
RP [auth 2R],
RPA [auth do],
RQ [auth 3h],
RQA [auth dM],
RR [auth 3H],
RRA [auth ea],
RS [auth 47],
RSA [auth ex],
RT [auth 4x],
RTA [auth eV],
RU [auth 4X],
RUA [auth fj],
RV [auth 5n],
RVA [auth fG],
RW [auth 5N],
RWA [auth g4],
RX [auth 6d],
RXA [auth t],
RY [auth 6D],
RYA [auth Q],
RZ [auth 73],
S [auth gp],
SA [auth gM],
SAA [auth 7u],
SB [auth ha],
SBA [auth 7U],
SC [auth hy],
SCA [auth 8k],
SD [auth hV],
SDA [auth 8K],
SE [auth ij],
SEA [auth 9a],
SF [auth iH],
SFA [auth 9A],
SG [auth j4],
SGA [auth 9Z],
SH [auth js],
SHA [auth am],
SI [auth 1Y],
SIA [auth aK],
SJ [auth kd],
SJA [auth 16],
SK [auth kB],
SKA [auth bv],
SL [auth kY],
SLA [auth bT],
SM [auth lm],
SMA [auth cg],
SN [auth lK],
SNA [auth cE],
SO [auth 2s],
SOA [auth d2],
SP [auth 2S],
SPA [auth dp],
SQ [auth 3i],
SQA [auth dN],
SR [auth 3I],
SRA [auth eb],
SS [auth 48],
SSA [auth ey],
ST [auth 4y],
STA [auth eW],
SU [auth 4Y],
SUA [auth 1w],
SV [auth 5o],
SVA [auth fH],
SW [auth 5O],
SWA [auth g5],
SX [auth 6e],
SXA [auth 2],
SY [auth 6E],
SYA [auth R],
SZ [auth 74],
T [auth gq],
TA [auth gN],
TAA [auth 7v],
TB [auth hb],
TBA [auth 7V],
TC [auth hz],
TCA [auth 8l],
TD [auth hW],
TDA [auth 8L],
TE [auth ik],
TEA [auth 9b],
TF [auth 1R],
TFA [auth 9B],
TG [auth j5],
TGA [auth Z],
TH [auth jt],
THA [auth an],
TI [auth jQ],
TIA [auth aL],
TJ [auth ke],
TJA [auth b8],
TK [auth kC],
TKA [auth bw],
TL [auth kZ],
TLA [auth bU],
TM [auth ln],
TMA [auth ch],
TN [auth lL],
TNA [auth cF],
TO [auth 2t],
TOA [auth d3],
TP [auth 2T],
TPA [auth dq],
TQ [auth 3j],
TQA [auth dO],
TR [auth 3J],
TRA [auth 1p],
TS [auth 49],
TSA [auth ez],
TT [auth 4z],
TTA [auth eX],
TU [auth 4Z],
TUA [auth fk],
TV [auth 5p],
TVA [auth fI],
TW [auth 5P],
TWA [auth g6],
TX [auth 6f],
TXA [auth u],
TY [auth 6F],
TYA [auth S],
TZ [auth 75],
U [auth gr],
UA [auth gO],
UAA [auth 7w],
UB [auth hc],
UBA [auth 7W],
UC [auth 1K],
UCA [auth 8m],
UD [auth hX],
UDA [auth 8M],
UE [auth il],
UEA [auth 9c],
UF [auth iI],
UFA [auth 9C],
UG [auth j6],
UGA [auth a0],
UH [auth ju],
UHA [auth ao],
UI [auth jR],
UIA [auth aM],
UJ [auth kf],
UJA [auth b9],
UK [auth kD],
UKA [auth bx],
UL [auth l0],
ULA [auth bV],
UM [auth lo],
UMA [auth ci],
UN [auth 2a],
UNA [auth cG],
UO [auth 2u],
UOA [auth 1i],
UP [auth 2U],
UPA [auth dr],
UQ [auth 3k],
UQA [auth dP],
UR [auth 3K],
URA [auth ec],
US [auth 4a],
USA [auth eA],
UT [auth 4A],
UTA [auth eY],
UU [auth 50],
UUA [auth fl],
UV [auth 5q],
UVA [auth fJ],
UW [auth 5Q],
UWA [auth g7],
UX [auth 6g],
UXA [auth v],
UY [auth 6G],
UYA [auth T],
UZ [auth 76],
V [auth 1D],
VA [auth gP],
VAA [auth 7x],
VB [auth hd],
VBA [auth 7X],
VC [auth hA],
VCA [auth 8n],
VD [auth hY],
VDA [auth 8N],
VE [auth im],
VEA [auth 9d],
VF [auth iJ],
VFA [auth 9D],
VG [auth j7],
VGA [auth a1],
VH [auth jv],
VHA [auth ap],
VI [auth jS],
VIA [auth aN],
VJ [auth kg],
VJA [auth ba],
VK [auth 23],
VKA [auth by],
VL [auth l1],
VLA [auth 1b],
VM [auth lp],
VMA [auth cj],
VN [auth lM],
VNA [auth cH],
VO [auth 2v],
VOA [auth d4],
VP [auth 2V],
VPA [auth ds],
VQ [auth 3l],
VQA [auth dQ],
VR [auth 3L],
VRA [auth ed],
VS [auth 4b],
VSA [auth eB],
VT [auth 4B],
VTA [auth eZ],
VU [auth 51],
VUA [auth fm],
VV [auth 5r],
VVA [auth fK],
VW [auth 5R],
VWA [auth 1B],
VX [auth 6h],
VXA [auth w],
VY [auth 6H],
VYA [auth U],
VZ [auth 77],
W [auth gs],
WA [auth gQ],
WAA [auth 7y],
WB [auth he],
WBA [auth 7Y],
WC [auth hB],
WCA [auth 8o],
WD [auth hZ],
WDA [auth 8O],
WE [auth in],
WEA [auth 9e],
WF [auth iK],
WFA [auth 9E],
WG [auth j8],
WGA [auth a2],
WH [auth 1W],
WHA [auth aq],
WI [auth jT],
WIA [auth 14],
WJ [auth kh],
WJA [auth bb],
WK [auth kE],
WKA [auth bz],
WL [auth l2],
WLA [auth bW],
WM [auth lq],
WMA [auth ck],
WN [auth lN],
WNA [auth cI],
WO [auth 2w],
WOA [auth d5],
WP [auth 2W],
WPA [auth dt],
WQ [auth 3m],
WQA [auth dR],
WR [auth 3M],
WRA [auth ee],
WS [auth 4c],
WSA [auth eC],
WT [auth 4C],
WTA [auth 1u],
WU [auth 52],
WUA [auth fn],
WV [auth 5s],
WVA [auth fL],
WW [auth 5S],
WWA [auth 0],
WX [auth 6i],
WXA [auth x],
WY [auth 6I],
WYA [auth V],
WZ [auth 78],
X [auth gt],
XA [auth gR],
XAA [auth 7z],
XB [auth hf],
XBA [auth 7Z],
XC [auth hC],
XCA [auth 8p],
XD [auth i0],
XDA [auth 8P],
XE [auth 1P],
XEA [auth 9f],
XF [auth iL],
XFA [auth 9F],
XG [auth j9],
XGA [auth a3],
XH [auth jw],
XHA [auth ar],
XI [auth jU],
XIA [auth aO],
XJ [auth ki],
XJA [auth bc],
XK [auth kF],
XKA [auth bA],
XL [auth l3],
XLA [auth bX],
XM [auth lr],
XMA [auth cl],
XN [auth lO],
XNA [auth cJ],
XO [auth 2x],
XOA [auth d6],
XP [auth 2X],
XPA [auth du],
XQ [auth 3n],
XQA [auth 1n],
XR [auth 3N],
XRA [auth ef],
XS [auth 4d],
XSA [auth eD],
XT [auth 4D],
XTA [auth f0],
XU [auth 53],
XUA [auth fo],
XV [auth 5t],
XVA [auth fM],
XW [auth 5T],
XWA [auth a],
XX [auth 6j],
XXA [auth y],
XY [auth 6J],
XYA [auth W],
XZ [auth 79],
Y [auth gu],
YA [auth gS],
YAA [auth 7A],
YB [auth 1I],
YBA [auth 80],
YC [auth hD],
YCA [auth 8q],
YD [auth i1],
YDA [auth 8Q],
YE [auth io],
YEA [auth 9g],
YF [auth iM],
YFA [auth 9G],
YG [auth ja],
YGA [auth a4],
YH [auth jx],
YHA [auth as],
YI [auth jV],
YIA [auth aP],
YJ [auth kj],
YJA [auth bd],
YK [auth kG],
YKA [auth bB],
YL [auth l4],
YLA [auth bY],
YM [auth 28],
YMA [auth cm],
YN [auth lP],
YNA [auth 1g],
YO [auth 2y],
YOA [auth d7],
YP [auth 2Y],
YPA [auth dv],
YQ [auth 3o],
YQA [auth dS],
YR [auth 3O],
YRA [auth eg],
YS [auth 4e],
YSA [auth eE],
YT [auth 4E],
YTA [auth f1],
YU [auth 54],
YUA [auth fp],
YV [auth 5u],
YVA [auth fN],
YW [auth 5U],
YWA [auth b],
YX [auth 6k],
YXA [auth z],
YY [auth 6K],
YYA [auth X],
YZ [auth 7a],
Z [auth gv],
ZA [auth gT],
ZAA [auth 7B],
ZB [auth hg],
ZBA [auth 81],
ZC [auth hE],
ZCA [auth 8r],
ZD [auth i2],
ZDA [auth 8R],
ZE [auth ip],
ZEA [auth 9h],
ZF [auth iN],
ZFA [auth 9H],
ZG [auth jb],
ZGA [auth a5],
ZH [auth jy],
ZHA [auth at],
ZI [auth jW],
ZIA [auth aQ],
ZJ [auth 21],
ZJA [auth be],
ZK [auth kH],
ZKA [auth 19],
ZL [auth l5],
ZLA [auth bZ],
ZM [auth ls],
ZMA [auth cn],
ZN [auth lQ],
ZNA [auth cK],
ZO [auth 2z],
ZOA [auth d8],
ZP [auth 2Z],
ZPA [auth dw],
ZQ [auth 3p],
ZQA [auth dT],
ZR [auth 3P],
ZRA [auth eh],
ZS [auth 4f],
ZSA [auth eF],
ZT [auth 4F],
ZTA [auth f2],
ZU [auth 55],
ZUA [auth fq],
ZV [auth 5v],
ZVA [auth 1z],
ZW [auth 5V],
ZWA [auth c],
ZX [auth 6l],
ZXA [auth A],
ZY [auth 6L],
ZYA [auth 5],
ZZ [auth 7b]
231Human immunodeficiency virus 1Mutation(s): 1 
Gene Names: gag
Find proteins for Q79791 (Human immunodeficiency virus 1)
Explore Q79791 
Go to UniProtKB:  Q79791
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ79791
Protein Feature View
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Aggregation State: PARTICLE 
  • Reconstruction Method: TOMOGRAPHY 
EM Software:
TaskSoftware PackageVersion

Structure Validation

View Full Validation Report

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-05-29
    Type: Initial release
  • Version 1.1: 2013-06-12
    Changes: Database references
  • Version 1.2: 2014-07-09
    Changes: Other
  • Version 1.3: 2014-12-10
    Changes: Other
  • Version 1.4: 2018-07-18
    Changes: Data collection