5HGC

A Serpin structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.164 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serpin380Taeniopygia guttataMutation(s): 0 
Gene Names: SERPINA12-1
UniProt
Find proteins for H0ZQY2 (Taeniopygia guttata)
Explore H0ZQY2 
Go to UniProtKB:  H0ZQY2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupH0ZQY2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HCY
Query on HCY

Download Ideal Coordinates CCD File 
B [auth A](11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione
C21 H30 O5
JYGXADMDTFJGBT-VWUMJDOOSA-N
BDG
Query on BDG

Download Ideal Coordinates CCD File 
F [auth A]2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose
C6 H14 N2 O4
SQTHUUHOUPJYLK-UKFBFLRUSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
E [auth A],
G [auth A]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.164 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.15α = 90
b = 116.15β = 90
c = 72.73γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-04-06
    Type: Initial release
  • Version 1.1: 2017-09-27
    Changes: Author supporting evidence, Database references, Derived calculations
  • Version 1.2: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 1.3: 2023-09-27
    Changes: Data collection, Database references, Refinement description, Structure summary