Crystal structure of a putative uncharacterized protein from Burkholderia cenocepacia
Bowatte, K., Delker, S.L., Abendroth, J., Lorimer, D.D., Edwards, T.E.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uncharacterized protein | 390 | Burkholderia cenocepacia J2315 | Mutation(s): 0  Gene Names: BCAL2258 | ||
UniProt | |||||
Find proteins for B4EDY7 (Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)) Explore B4EDY7  Go to UniProtKB:  B4EDY7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B4EDY7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | E [auth A], I [auth B], N [auth C], S [auth D] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
GOL Query on GOL | G [auth A], K [auth B], P [auth C], U [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
EDO Query on EDO | H [auth A], L [auth B], Q [auth C], V [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
NA Query on NA | F [auth A] J [auth B] M [auth C] O [auth C] R [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 62.1 | α = 90 |
b = 134.47 | β = 90.43 |
c = 98.08 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
PARROT | phasing |
ARP | model building |
Coot | model building |
PHENIX | refinement |
PDB_EXTRACT | data extraction |