8J2V

Glucosyl transferase NbUGT72AY1 co-crystallized with Scopoletin

• PDB DOI: https://doi.org/10.2210/pdb8J2V/pdb

• Classification: TRANSFERASE
• Organism(s): Nicotiana tabacum
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-04-15 Released: 2024-04-17 
• Deposition Author(s): Arold, S.T., Hameed, U.F.S.
• Funding Organization(s): Other private

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.229 
• R-Value Work: 0.189 
• R-Value Observed: 0.191 

Starting Model: in silico

Literature

Glucosyl transferase NbUGT72AY1 co-crystallized with Scopoletin

Arold, S.T., Hameed, U.F.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 54.23 kDa 
• Atom Count: 3,758 
• Modelled Residue Count: 459 
• Deposited Residue Count: 482 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycosyltransferase	A	482	Nicotiana tabacum	Mutation(s): 0  EC: 2.4.1
UniProt
Find proteins for A0A8K1ZRH3 (Nicotiana benthamiana) Explore A0A8K1ZRH3  Go to UniProtKB:  A0A8K1ZRH3

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
T83 (Subject of Investigation/LOI)	B [auth A]	7-hydroxy-6-methoxy-2H-1-benzopyran-2-one C10 H8 O4 RODXRVNMMDRFIK-UHFFFAOYSA-N
GOL	C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.229 
• R-Value Work: 0.189 
• R-Value Observed: 0.191 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.58	α = 90
b = 103.66	β = 90
c = 54	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-17 
Deposition Author(s): Arold, S.T., Hameed, U.F.S.

---

Funding Organization	Location	Grant Number
Other private	Saudi Arabia	King Abdullah University of Science and Technology

Revision History  

• Version 1.0: 2024-04-17
  Type: Initial release
  
• Version 2.0: 2024-09-04
  Type: Coordinate replacement
  Reason: Atoms with unrealistic or zero occupancies
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Refinement description, Structure summary