8PNB

HRV empty capsid

• PDB DOI: https://doi.org/10.2210/pdb8PNB/pdb
• EM Map EMD-17780: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): rhinovirus B14
• Expression System: rhinovirus B14
• Mutation(s): No 


• Deposited: 2023-06-30 Released: 2024-11-20 
• Deposition Author(s): Gil-Cantero, D., Mata, C.P., Mateu, M.G., Caston, J.R.
• Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM of human rhinovirus reveals capsid-RNA duplex interactions that provide insights into virus assembly and genome uncoating

Gil-Cantero, D., Mata, C.P., Valiente, L., Rodriguez-Huete, A., Valbuena, A., Twarock, R., Stockley, P.G., Mateu, M.G., Caston, J.R.

(2024) Commun Biol 

• DOI: https://doi.org/10.1038/s42003-024-07213-2

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 180-mer - A60B60C60 Pseudo Symmetry: Icosahedral - I  (Explore in 3D)
Pseudo Stoichiometry: Hetero 180-mer - A120B60 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 80.37 kDa 
• Atom Count: 5,656 
• Modelled Residue Count: 722 
• Deposited Residue Count: 722 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP1	A [auth 1]	230	rhinovirus B14	Mutation(s): 0
UniProt
Find proteins for P03303 (Human rhinovirus 14) Explore P03303  Go to UniProtKB:  P03303

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP2	B [auth 2]	256	rhinovirus B14	Mutation(s): 0
UniProt
Find proteins for P03303 (Human rhinovirus 14) Explore P03303  Go to UniProtKB:  P03303

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Genome polyprotein	C [auth 3]	236	rhinovirus B14	Mutation(s): 0  EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for P03303 (Human rhinovirus 14) Explore P03303  Go to UniProtKB:  P03303

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-20 
Deposition Author(s): Gil-Cantero, D., Mata, C.P., Mateu, M.G., Caston, J.R.

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Funding Organization	Location	Grant Number
Spanish Ministry of Science, Innovation, and Universities	Spain	PID2020-113287RB-I00

Revision History  

• Version 1.0: 2024-11-20
  Type: Initial release