8QGT

5'vRNA-bound Hantaan virus polymerase in monomeric intermediate state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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This is version 1.0 of the entry. See complete history


Literature

Structural characterization of the oligomerization of full-length Hantaan virus polymerase into symmetric dimers and hexamers.

Durieux Trouilleton, Q.Housset, D.Tarillon, P.Arragain, B.Malet, H.

(2024) Nat Commun 15: 2256-2256

  • DOI: https://doi.org/10.1038/s41467-024-46601-4
  • Primary Citation of Related Structures:  
    8QE5, 8QGT, 8QGU, 8QH3, 8QHD

  • PubMed Abstract: 

    Hantaan virus is a dangerous human pathogen whose segmented negative-stranded RNA genome is replicated and transcribed by a virally-encoded multi-functional polymerase. Here we describe the complete cryo-electron microscopy structure of Hantaan virus polymerase in several oligomeric forms. Apo polymerase protomers can adopt two drastically different conformations, which assemble into two distinct symmetric homodimers, that can themselves gather to form hexamers. Polymerase dimerization induces the stabilization of most polymerase domains, including the C-terminal domain that contributes the most to dimer's interface, along with a lariat region that participates to the polymerase steadying. Binding to viral RNA induces significant conformational changes resulting in symmetric oligomer disruption and polymerase activation, suggesting the possible involvement of apo multimers as protecting systems that would stabilize the otherwise flexible C-terminal domains. Overall, these results provide insights into the multimerization capability of Hantavirus polymerase and may help to define antiviral compounds to counteract these life-threatening viruses.


  • Organizational Affiliation

    Université Grenoble Alpes, CEA, CNRS, IBS, F-38000, Grenoble, France.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-directed RNA polymerase L2,173Hantaan virus 76-118Mutation(s): 0 
EC: 3.1 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for P23456 (Hantaan virus (strain 76-118))
Explore P23456 
Go to UniProtKB:  P23456
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP23456
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (5'-R(P*UP*AP*GP*UP*AP*GP*UP*AP*GP*AP*CP*A)-3')B [auth C]25Hantaan virus 76-118
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.2.1
MODEL REFINEMENTPHENIX1.20.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-19-CE11-0024

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-27
    Type: Initial release