Structure of a Step II catalytically activated spliceosome form Chlamydomonas reinhardtii
Lu, Y., Zhan, X.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MPN domain-containing protein | 2,398 | Chlamydomonas reinhardtii | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A2K3E5Q8 (Chlamydomonas reinhardtii) Explore A0A2K3E5Q8  Go to UniProtKB:  A0A2K3E5Q8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3E5Q8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Elongation factor Tu, chloroplastic | 989 | Chlamydomonas reinhardtii | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A8JCA8 (Chlamydomonas reinhardtii) Explore A8JCA8  Go to UniProtKB:  A8JCA8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8JCA8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
U5-40K | D [auth E] | 362 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3DMA3 (Chlamydomonas reinhardtii) Explore A0A2K3DMA3  Go to UniProtKB:  A0A2K3DMA3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3DMA3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Pre-mRNA-processing factor 19 | F [auth q], G [auth r], H [auth s], I [auth t] | 503 | Chlamydomonas reinhardtii | Mutation(s): 0  EC: 2.3.2.27 | |
UniProt | |||||
Find proteins for A8I9S6 (Chlamydomonas reinhardtii) Explore A8I9S6  Go to UniProtKB:  A8I9S6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8I9S6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small nuclear ribonucleoprotein Sm D3 | J [auth a] | 127 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A8I0E2 (Chlamydomonas reinhardtii) Explore A8I0E2  Go to UniProtKB:  A8I0E2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8I0E2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small nuclear ribonucleoprotein G | K [auth g] | 77 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A8HRS8 (Chlamydomonas reinhardtii) Explore A8HRS8  Go to UniProtKB:  A8HRS8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8HRS8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small nuclear ribonucleoprotein E | L [auth e] | 87 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A8IYZ2 (Chlamydomonas reinhardtii) Explore A8IYZ2  Go to UniProtKB:  A8IYZ2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8IYZ2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sm protein F | M [auth f] | 85 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A8J834 (Chlamydomonas reinhardtii) Explore A8J834  Go to UniProtKB:  A8J834 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8J834 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small nuclear ribonucleoprotein Sm D2 | N [auth d] | 110 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A8I074 (Chlamydomonas reinhardtii) Explore A8I074  Go to UniProtKB:  A8I074 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8I074 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small nuclear ribonucleoprotein Sm D1 | O [auth c] | 114 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3CTT9 (Chlamydomonas reinhardtii) Explore A0A2K3CTT9  Go to UniProtKB:  A0A2K3CTT9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3CTT9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sm domain-containing protein | P [auth b] | 265 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3CX88 (Chlamydomonas reinhardtii) Explore A0A2K3CX88  Go to UniProtKB:  A0A2K3CX88 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3CX88 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Syf1 | Q [auth I] | 925 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3D3K4 (Chlamydomonas reinhardtii) Explore A0A2K3D3K4  Go to UniProtKB:  A0A2K3D3K4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3D3K4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Crooked neck protein | R [auth J] | 835 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3CXZ4 (Chlamydomonas reinhardtii) Explore A0A2K3CXZ4  Go to UniProtKB:  A0A2K3CXZ4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3CXZ4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cwf15/Cwc15 cell cycle control protein | S [auth P] | 235 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3CN43 (Chlamydomonas reinhardtii) Explore A0A2K3CN43  Go to UniProtKB:  A0A2K3CN43 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3CN43 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PPIase cyclophilin-type domain-containing protein | T [auth M] | 563 | Chlamydomonas reinhardtii | Mutation(s): 0  EC: 5.2.1.8 | |
UniProt | |||||
Find proteins for A0A2K3E769 (Chlamydomonas reinhardtii) Explore A0A2K3E769  Go to UniProtKB:  A0A2K3E769 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3E769 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PLRG1 | U [auth T] | 518 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3DAW8 (Chlamydomonas reinhardtii) Explore A0A2K3DAW8  Go to UniProtKB:  A0A2K3DAW8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3DAW8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Rbm22 | V [auth O] | 417 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3E050 (Chlamydomonas reinhardtii) Explore A0A2K3E050  Go to UniProtKB:  A0A2K3E050 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3E050 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
G10 protein | W [auth N] | 233 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3DAL7 (Chlamydomonas reinhardtii) Explore A0A2K3DAL7  Go to UniProtKB:  A0A2K3DAL7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3DAL7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SKI-interacting protein SKIP SNW domain-containing protein | X [auth R] | 684 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3E831 (Chlamydomonas reinhardtii) Explore A0A2K3E831  Go to UniProtKB:  A0A2K3E831 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3E831 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptidyl-prolyl cis-trans isomerase | Z [auth S] | 157 | Chlamydomonas reinhardtii | Mutation(s): 0  EC: 5.2.1.8 | |
UniProt | |||||
Find proteins for A8JGI0 (Chlamydomonas reinhardtii) Explore A8JGI0  Go to UniProtKB:  A8JGI0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8JGI0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Prp17 | AA [auth W] | 576 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3DUN6 (Chlamydomonas reinhardtii) Explore A0A2K3DUN6  Go to UniProtKB:  A0A2K3DUN6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3DUN6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cdc5L | BA [auth L] | 833 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3DYR4 (Chlamydomonas reinhardtii) Explore A0A2K3DYR4  Go to UniProtKB:  A0A2K3DYR4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3DYR4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Pre-mRNA-splicing factor SPF27 | CA [auth K] | 303 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3CNP4 (Chlamydomonas reinhardtii) Explore A0A2K3CNP4  Go to UniProtKB:  A0A2K3CNP4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3CNP4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CWF21 domain-containing protein | DA [auth U] | 721 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3DFH0 (Chlamydomonas reinhardtii) Explore A0A2K3DFH0  Go to UniProtKB:  A0A2K3DFH0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3DFH0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 28 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MI domain-containing protein | EA [auth V] | 928 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3DML4 (Chlamydomonas reinhardtii) Explore A0A2K3DML4  Go to UniProtKB:  A0A2K3DML4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3DML4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 29 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Intron-binding protein aquarius | FA [auth Q] | 1,844 | Chlamydomonas reinhardtii | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A2K3DR41 (Chlamydomonas reinhardtii) Explore A0A2K3DR41  Go to UniProtKB:  A0A2K3DR41 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2K3DR41 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
U5 snRNA | 111 | Chlamydomonas reinhardtii | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Length | Organism | Image | |
U6 snRNA | E [auth F] | 101 | Chlamydomonas reinhardtii | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
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Molecule | Chains | Length | Organism | Image | |
U2 snRNA | Y [auth H] | 192 | Chlamydomonas reinhardtii | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 30 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (5'-R(P*CP*CP*GP*AP*AP*CP*G)-3') | GA [auth 5] | 7 | Chlamydomonas reinhardtii | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 31 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (173-mer) | HA [auth 3] | 173 | Chlamydomonas reinhardtii | ||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GTP Query on GTP | IA [auth C] | GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O14 P3 XKMLYUALXHKNFT-UUOKFMHZSA-N | |||
ZN Query on ZN | QA [auth O], RA [auth O], SA [auth N] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | JA [auth C] KA [auth F] LA [auth F] MA [auth F] NA [auth F] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | X [auth R] | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China (NSFC) | China | -- |