Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10
Goulart Stollmaier, J., Watson, P.R., Christianson, D.W.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Polyamine deacetylase HDAC10 | 676 | Danio rerio | Mutation(s): 0  Gene Names: hdac10 EC: 3.5.1.48 (PDB Primary Data), 3.5.1.62 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for F1QCV2 (Danio rerio) Explore F1QCV2  Go to UniProtKB:  F1QCV2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1QCV2 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A1AVQ (Subject of Investigation/LOI) Query on A1AVQ | C [auth A] | 1-[4-(2-aminoethyl)phenyl]-2-sulfanylethan-1-one C10 H13 N O S NYLZSDYWRQULOF-UHFFFAOYSA-N | |||
PO4 Query on PO4 | G [auth A], H [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
ZN Query on ZN | K [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | B [auth A], D [auth A], E [auth A], F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
K Query on K | I [auth A], J [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 80.728 | α = 90 |
b = 80.728 | β = 90 |
c = 240.44 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
autoPROC | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM49758 |