6VBG
Lactose permease complex with thiodigalactoside and nanobody 9043
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6vbga_ | Membrane and cell surface proteins and peptides | MFS general substrate transporter | MFS general substrate transporter | LacY-like proton/sugar symporter | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
C [auth B] | d6vbgb_ | Membrane and cell surface proteins and peptides | MFS general substrate transporter | MFS general substrate transporter | LacY-like proton/sugar symporter | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B [auth C] | d6vbgc_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D | d6vbgd_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | MFS general substrate transporter | 8039139 | 3000310 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | MFS general substrate transporter | 8039139 | 3000310 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01306 | e6vbgA2 | A: alpha complex topology | X: Major facilitator superfamily (MFS) general substrate transporter (From Topology) | H: Major facilitator superfamily (MFS) general substrate transporter (From Topology) | T: Major facilitator superfamily (MFS) general substrate transporter | F: PF01306 | ECOD (1.6) |
C [auth B] | PF01306 | e6vbgB1 | A: alpha complex topology | X: Major facilitator superfamily (MFS) general substrate transporter (From Topology) | H: Major facilitator superfamily (MFS) general substrate transporter (From Topology) | T: Major facilitator superfamily (MFS) general substrate transporter | F: PF01306 | ECOD (1.6) |
B [auth C] | PF07686 | e6vbgC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D | PF07686 | e6vbgD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth C], D | Heavy Chain | IGHV1 | - | galactoside permease | SAbDab (2024-05-03) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF01306 | LacY proton/sugar symporter (LacY_symp) | LacY proton/sugar symporter | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR018457 | LacY/RafB permease family, conserved site | Conserved Site |
A, C [auth B] | IPR036259 | MFS transporter superfamily | Homologous Superfamily |
A, C [auth B] | IPR000576 | LacY/RafB permease family | Family |
A, C [auth B] | IPR020846 | Major facilitator superfamily domain | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Major Facilitator Superfamily (MFS) | LacY-like proton/sugar symporter |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |