7D3L

FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY F145

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 1]	Rhv_5	e7d3l11	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_5	ECOD (1.6)
B [auth 2]	Rhv_4	e7d3l21	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)
C [auth 3]	Rhv_3	e7d3l31	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_3	ECOD (1.6)
F [auth L]	V-set_3	e7d3lL1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
E [auth H]	Heavy Chain	IGHV1	-	o/tibet/99 vp2	SAbDab (2024-04-19)
F [auth L]	Light Chain	IGLV1	Lambda	o/tibet/99 vp2	SAbDab (2024-04-19)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth 2]	PF00073	picornavirus capsid protein (Rhv)	picornavirus capsid protein	CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...	CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.	Domain
C [auth 3]	PF00073	picornavirus capsid protein (Rhv)	picornavirus capsid protein	CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...	CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.	Domain
D [auth 4]	PF08935	Viral protein VP4 subunit (VP4_2)	Viral protein VP4 subunit	This domain is predominantly found in viral proteins from the family Picornaviridae. It is VP4 of the viral polyprotein which, in poliovirus, is part of the capsid that consists of 60 copies each of four proteins VP1, VP2, VP3, and VP4 arranged on an ...	This domain is predominantly found in viral proteins from the family Picornaviridae. It is VP4 of the viral polyprotein which, in poliovirus, is part of the capsid that consists of 60 copies each of four proteins VP1, VP2, VP3, and VP4 arranged on an icosahedral lattice [1]. VP4 is on the inside and differs from the others in being small, myristoylated and having an extended structure. Productive infection involves the externalisation of the VP4, which is cleaved from the rest, along with the N-terminus of VP1. There thus seem to be three stages of the virus, ie a multi-step process for cell entry involving RNA translocation through a membrane channel formed by the externalised N termini of VP1 [2].	Domain
E [auth H]	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1]	O/TIBET/99 VP1	structural molecule activity	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	viral capsid virion component
B [auth 2]	O/TIBET/99 VP2	structural molecule activity	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	-
C [auth 3]	O/TIBET/99 VP3	structural molecule activity	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	viral capsid icosahedral viral capsid virion component intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region
D [auth 4]	O/TIBET/99 VP4	structural molecule activity	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	viral capsid icosahedral viral capsid virion component intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region
E [auth H]	F145 VH	-	response to stimulus immune response immune system process adaptive immune response	protein-containing complex immunoglobulin complex
F [auth L]	F145 VL	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A [auth 1]	IPR004080	Foot-and-mouth disease virus VP1 coat	Domain
A [auth 1]	IPR001676	Picornavirus capsid	Domain
A [auth 1]	IPR033703	Picornavirus/Calicivirus coat protein	Domain
B [auth 2]	IPR029053	Viral coat protein subunit	Homologous Superfamily
B [auth 2]	IPR001676	Picornavirus capsid	Domain
B [auth 2]	IPR033703	Picornavirus/Calicivirus coat protein	Domain
C [auth 3]	IPR029053	Viral coat protein subunit	Homologous Superfamily
C [auth 3]	IPR004080	Foot-and-mouth disease virus VP1 coat	Domain
C [auth 3]	IPR015031	Capsid protein VP4, Picornavirus	Domain
C [auth 3]	IPR001676	Picornavirus capsid	Domain
C [auth 3]	IPR033703	Picornavirus/Calicivirus coat protein	Domain
C [auth 3]	IPR037080	Capsid protein VP4 superfamily, Picornavirus	Homologous Superfamily
D [auth 4]	IPR029053	Viral coat protein subunit	Homologous Superfamily
D [auth 4]	IPR004080	Foot-and-mouth disease virus VP1 coat	Domain
D [auth 4]	IPR015031	Capsid protein VP4, Picornavirus	Domain
D [auth 4]	IPR001676	Picornavirus capsid	Domain
D [auth 4]	IPR033703	Picornavirus/Calicivirus coat protein	Domain
D [auth 4]	IPR037080	Capsid protein VP4 superfamily, Picornavirus	Homologous Superfamily
E [auth H]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
E [auth H]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
E [auth H]	IPR003599	Immunoglobulin subtype	Domain
E [auth H]	IPR013106	Immunoglobulin V-set domain	Domain
E [auth H]	IPR007110	Immunoglobulin-like domain	Domain

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7D3L

FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY F145

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

SAbDab Antibody Annotation SAbDab Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage