6P26

Escherichia coli tRNA synthetase in complex with compound 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.16 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.206 

wwPDB Validation   3D Report Full Report



Literature

Escherichia coli tRNA synthetase in complex with compound 3

Kahne, D.Baidin, V.Owens, T.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Phenylalanine--tRNA ligase alpha subunitAC332Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: pheSD8B36_10295
EC: 6.1.1.20
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Phenylalanine--tRNA ligase beta subunitBD795Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: pheTD8B36_10300
EC: 6.1.1.20
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NO4
Query on NO4

Download CCD File 
A, C
N-benzyl-2-(cyclohex-1-en-1-yl)ethan-1-amine
C15 H21 N
RTJNHLXWVAXRBH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.16 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.206 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.193α = 90
b = 174.04β = 90
c = 252.348γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesU19-AI109764-05-8340

Revision History 

  • Version 1.0: 2020-11-18
    Type: Initial release