Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRibonuclease H-like 8044526 3000143 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibonuclease H-like 8044526 3000143 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibonuclease H-like 8044526 3000143 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Arvee1bi4A1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
Crvee1bi4C1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
Brvee1bi4B1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
C3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
B3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF00665Integrase core domain (rve)Integrase core domainIntegrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ...Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain Pfam:PF00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyses the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
INTEGRASE
INTEGRASE

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C
IPR036397Ribonuclease H superfamilyHomologous Superfamily
A, C
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A, C
IPR001995Peptidase A2A, retrovirus, catalyticDomain
A, C
IPR001878Zinc finger, CCHC-typeDomain
A, C
IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
A, C
IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
A, C
IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
A, C
IPR018061RetropepsinsDomain
A, C
IPR010661Reverse transcriptase thumbDomain
A, C
IPR002156Ribonuclease H domainDomain
A, C
IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
A, C
IPR003308Integrase, N-terminal zinc-binding domainDomain
A, C
IPR001584Integrase, catalytic coreDomain
A, C
IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
A, C
IPR010999Retroviral matrix proteinHomologous Superfamily
A, C
IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
A, C
IPR001969Aspartic peptidase, active siteActive Site
A, C
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
A, C
IPR017856Integrase-like, N-terminalHomologous Superfamily
A, C
IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
A, C
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A, C
IPR001037Integrase, C-terminal, retroviralDomain
A, C
IPR034170Retropepsin-like catalytic domainDomain
A, C
IPR000477Reverse transcriptase domainDomain
A, C
IPR010659Reverse transcriptase connectionDomain
A, C
IPR008916Retrovirus capsid, C-terminalHomologous Superfamily
IPR036397Ribonuclease H superfamilyHomologous Superfamily
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR001995Peptidase A2A, retrovirus, catalyticDomain
IPR001878Zinc finger, CCHC-typeDomain
IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
IPR018061RetropepsinsDomain
IPR010661Reverse transcriptase thumbDomain
IPR002156Ribonuclease H domainDomain
IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
IPR003308Integrase, N-terminal zinc-binding domainDomain
IPR001584Integrase, catalytic coreDomain
IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
IPR010999Retroviral matrix proteinHomologous Superfamily
IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
IPR001969Aspartic peptidase, active siteActive Site
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
IPR017856Integrase-like, N-terminalHomologous Superfamily
IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR001037Integrase, C-terminal, retroviralDomain
IPR034170Retropepsin-like catalytic domainDomain
IPR000477Reverse transcriptase domainDomain
IPR010659Reverse transcriptase connectionDomain
IPR008916Retrovirus capsid, C-terminalHomologous Superfamily