1L3W | pdb_00001l3w

C-cadherin Ectodomain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1l3wa1	All beta proteins	Immunoglobulin-like beta-sandwich	Cadherin-like	Cadherin	C-cadherin ectodomain	African clawed frog (Xenopus laevis ) [TaxId: 8355 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cadherin	8055236	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8055480	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8055481	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8055483	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8055485	4007535	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8055237	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8055479	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8055482	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8055484	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8055486	3002049	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cadherin	e1l3wA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
A	Cadherin_1	e1l3wA5	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	EP-cadherin	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding cadherin binding protein binding beta-catenin binding	adherens junction organization cellular component organization cell junction organization cellular process cellular component organization or biogenesis cell-cell junction organization developmental process anatomical structure morphogenesis anatomical structure development cell morphogenesis cell adhesion cell-cell adhesion cell-cell adhesion via plasma-membrane adhesion molecules homophilic cell adhesion via plasma membrane adhesion molecules adherens junction organization cellular component organization cell junction organization cellular process cellular component organization or biogenesis cell-cell junction organization developmental process anatomical structure morphogenesis anatomical structure development cell morphogenesis cell adhesion cell-cell adhesion cell-cell adhesion via plasma-membrane adhesion molecules homophilic cell adhesion via plasma membrane adhesion molecules calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules cell migration cell motility cell-cell adhesion mediated by cadherin cellular component biogenesis cellular component assembly cell junction assembly cell-cell junction assembly	cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction cell periphery protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane plasma membrane membrane protein complex extrinsic component of membrane cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction cell periphery protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane plasma membrane membrane protein complex extrinsic component of membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR014868	Cadherin prodomain	Domain
A	IPR000233	Cadherin, Y-type LIR-motif	Domain
A	IPR027397	Catenin binding domain superfamily	Homologous Superfamily
A	IPR039808	Cadherin	Family
A	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A	IPR020894	Cadherin conserved site	Conserved Site
A	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.