1LYB
CRYSTAL STRUCTURES OF NATIVE AND INHIBITED FORMS OF HUMAN CATHEPSIN D: IMPLICATIONS FOR LYSOSOMAL TARGETING AND DRUG DESIGN
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1lyb.1 | All beta proteins | Acid proteases | Acid proteases | Pepsin-like | Cathepsin D | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth C] | d1lyb.2 | All beta proteins | Acid proteases | Acid proteases | Pepsin-like | Cathepsin D | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1lyb.1 | All beta proteins | Acid proteases | Acid proteases | Pepsin-like | Cathepsin D | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E [auth D] | d1lyb.2 | All beta proteins | Acid proteases | Acid proteases | Pepsin-like | Cathepsin D | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
D [auth C] | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
B | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
E [auth D] | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B, E [auth D] | PF00026 | Eukaryotic aspartyl protease (Asp) | Eukaryotic aspartyl protease | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth C] | IPR001461 | Aspartic peptidase A1 | Family |
A, D [auth C] | IPR033121 | Peptidase family A1 domain | Domain |
A, D [auth C] | IPR033144 | Cathepsin D | Family |
A, D [auth C] | IPR021109 | Aspartic peptidase domain superfamily | Homologous Superfamily |
A, D [auth C] | IPR001969 | Aspartic peptidase, active site | Active Site |
A, D [auth C] | IPR012848 | Aspartic peptidase, N-terminal | Domain |
B, E [auth D] | IPR001461 | Aspartic peptidase A1 | Family |
B, E [auth D] | IPR033121 | Peptidase family A1 domain | Domain |
B, E [auth D] | IPR033144 | Cathepsin D | Family |
B, E [auth D] | IPR021109 | Aspartic peptidase domain superfamily | Homologous Superfamily |
B, E [auth D] | IPR001969 | Aspartic peptidase, active site | Active Site |
B, E [auth D] | IPR012848 | Aspartic peptidase, N-terminal | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | All beta monotopic/peripheral | Peptidase clan AA | Eukaryotic aspartyl protease |