1M1P | pdb_00001m1p

P21 crystal structure of the tetraheme cytochrome c3 from Shewanella oneidensis MR1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1m1pa_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
B	d1m1pb_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
C	d1m1pc_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
D	d1m1pd_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
E	d1m1pe_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)
F	d1m1pf_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain	(Shewanella oneidensis ) [TaxId: 70863 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Di-heme elbow motif	8003640	3000145	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Di-heme elbow motif	8003640	3000145	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Di-heme elbow motif	8003640	3000145	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Di-heme elbow motif	8003640	3000145	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Di-heme elbow motif	8003640	3000145	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Di-heme elbow motif	8003640	3000145	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cytochrom_c3_2	e1m1pA1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_c3_2	ECOD (1.6)
B	Cytochrom_c3_2	e1m1pB1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_c3_2	ECOD (1.6)
C	Cytochrom_c3_2	e1m1pC1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_c3_2	ECOD (1.6)
D	Cytochrom_c3_2	e1m1pD1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_c3_2	ECOD (1.6)
E	Cytochrom_c3_2	e1m1pE1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_c3_2	ECOD (1.6)
F	Cytochrom_c3_2	e1m1pF1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_c3_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)
B	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)
C	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)
D	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)
E	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)
F	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF14537	Cytochrome c3 (Cytochrom_c3_2)	Cytochrome c3	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Small tetraheme cytochrome c	cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036280	Multiheme cytochrome superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR012286	Tetrahaem cytochrome domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.