1NKZ
Crystal structure of LH2 B800-850 from Rps. acidophila at 2.0 Angstrom resolution
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Light-harvesting complex subunits | 8043857 | 3000199 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Light-harvesting complex subunits | 8043857 | 3000199 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Light-harvesting complex subunits | 8031479 | 4003043 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Light-harvesting complex subunits | 8043857 | 3000199 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | LHC_like | e1nkzC1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
E | LHC_like | e1nkzE1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
A | LHC_like | e1nkzA1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
B | LHC_like | e1nkzB1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
D | LHC_like | e1nkzD1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
F | LHC_like | e1nkzF1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 4.10.220.20 | Few Secondary Structures | Irregular | Light-harvesting Protein | Light-harvesting complex | CATH (4.3.0) |
E | 4.10.220.20 | Few Secondary Structures | Irregular | Light-harvesting Protein | Light-harvesting complex | CATH (4.3.0) |
A | 4.10.220.20 | Few Secondary Structures | Irregular | Light-harvesting Protein | Light-harvesting complex | CATH (4.3.0) |
B | 1.20.5.250 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
D | 1.20.5.250 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
F | 1.20.5.250 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain | |
PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000066 | Antenna complex, alpha/beta subunit | Domain | |
IPR018332 | Antenna complex, alpha subunit | Family | |
IPR002361 | Antenna complex, alpha subunit conserved site | Conserved Site | |
IPR035889 | Light-harvesting complex | Homologous Superfamily | |
IPR000066 | Antenna complex, alpha/beta subunit | Domain | |
IPR023624 | Antenna complex, beta domain superfamily | Homologous Superfamily | |
IPR035889 | Light-harvesting complex | Homologous Superfamily | |
IPR023623 | Antenna complex, beta subunit, conserved site | Conserved Site | |
IPR002362 | Light-harvesting protein B beta chain | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Light-harvesting complexes from bacteria |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Light-Harvesting Complexes | Light-Harvesting Complex |