Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd1nkzc_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits (Rhodoblastus acidophilus ) [TaxId: 1074 ], SCOPe (2.08)
Ed1nkze_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits (Rhodoblastus acidophilus ) [TaxId: 1074 ], SCOPe (2.08)
Ad1nkza_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits (Rhodoblastus acidophilus ) [TaxId: 1074 ], SCOPe (2.08)
Bd1nkzb_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits (Rhodoblastus acidophilus ) [TaxId: 1074 ], SCOPe (2.08)
Dd1nkzd_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits (Rhodoblastus acidophilus ) [TaxId: 1074 ], SCOPe (2.08)
Fd1nkzf_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits (Rhodoblastus acidophilus ) [TaxId: 1074 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyLight-harvesting complex subunits 8043857 3000199 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyLight-harvesting complex subunits 8043857 3000199 SCOP2B (2022-06-29)
ASCOP2 FamilyLight-harvesting complex subunits 8031479 4003043 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyLight-harvesting complex subunits 8043857 3000199 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CLHC_likee1nkzC1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
ELHC_likee1nkzE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
ALHC_likee1nkzA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
BLHC_likee1nkzB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
DLHC_likee1nkzD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
FLHC_likee1nkzF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
B, D, F
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E
Light-harvesting protein B-800/850, alpha chain
B, D, F
Light-harvesting protein B-800/850, beta chain

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneAlpha-helical polytopicPhotosystemsLight-harvesting complexes from bacteria

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, C, E
CXM Parent Component: MET

RESIDAA0363 , AA0493

PSI-MOD :  N-carboxy-L-methionine MOD:00368 , N-(dihydroxymethyl)-L-methionine (fMet) MOD:01446 , N-(dihydroxymethyl)-L-methionine (Met) MOD:01447