1SBZ

Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1sbza_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Probable aromatic acid decarboxylase Pad1	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
B	d1sbzb_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Probable aromatic acid decarboxylase Pad1	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
C	d1sbzc_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Probable aromatic acid decarboxylase Pad1	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
D	d1sbzd_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Probable aromatic acid decarboxylase Pad1	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8029950	4003907	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8042329	3001775	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8042329	3001775	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8042329	3001775	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8042329	3001775	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Flavoprotein	e1sbzA1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
B	Flavoprotein	e1sbzB1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
C	Flavoprotein	e1sbzC1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
D	Flavoprotein	e1sbzD1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (4.3.0)
B	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (4.3.0)
C	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (4.3.0)
D	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02441	Flavoprotein (Flavoprotein)	Flavoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Probable aromatic acid decarboxylase	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity flavin prenyltransferase activity	catabolic process metabolic process cellular process response to stimulus response to chemical response to toxic substance	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036551	Flavin prenyltransferase-like	Homologous Superfamily
A, B, C, D	IPR003382	Flavoprotein	Domain
A, B, C, D	IPR004507	Flavin prenyltransferase UbiX-like	Family
A, B, C, D	IPR032901	Probable UbiX-like flavin prenyltransferase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.