1VKD

Crystal structure of a predicted glycosidase (tm1225) from thermotoga maritima msb8 at 2.10 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vkda1	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	Hypothetical protein TM1225	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
A	d1vkda2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
B	d1vkdb_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	Hypothetical protein TM1225	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
C	d1vkdc_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	Hypothetical protein TM1225	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
D	d1vkdd_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	Hypothetical protein TM1225	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
E	d1vkde_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	Hypothetical protein TM1225	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
F	d1vkdf_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	Hypothetical protein TM1225	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TM1225-like predicted glycosylases	8028992	4001864	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Furanosidase-like	8041371	3000845	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Furanosidase-like	8041371	3000845	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Furanosidase-like	8041371	3000845	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Furanosidase-like	8041371	3000845	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Furanosidase-like	8041371	3000845	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Furanosidase-like	8041371	3000845	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_hydro_130	e1vkdA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_130	ECOD (1.6)
B	Glyco_hydro_130	e1vkdB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_130	ECOD (1.6)
C	Glyco_hydro_130	e1vkdC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_130	ECOD (1.6)
D	Glyco_hydro_130	e1vkdD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_130	ECOD (1.6)
E	Glyco_hydro_130	e1vkdE1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_130	ECOD (1.6)
F	Glyco_hydro_130	e1vkdF1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_130	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
B	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
C	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
D	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
E	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
F	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF04041	beta-1,4-mannooligosaccharide phosphorylase (Glyco_hydro_130)	beta-1,4-mannooligosaccharide phosphorylase	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	conserved hypothetical protein TM1225	glycosyltransferase activity transferase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR007184	Mannoside phosphorylase	Family
A, B, C, D, E A, B, C, D, E, F	IPR023296	Glycosyl hydrolase, five-bladed beta-propeller domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.