Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth S]d1wdds_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Oryza sativa Japonica Group ) [TaxId: 39947 ], SCOPe (2.08)
D [auth W]d1wddw_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Oryza sativa Japonica Group ) [TaxId: 39947 ], SCOPe (2.08)
Ad1wdda1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Oryza sativa Japonica Group ) [TaxId: 39947 ], SCOPe (2.08)
Ad1wdda2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Oryza sativa Japonica Group ) [TaxId: 39947 ], SCOPe (2.08)
C [auth E]d1wdde1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Oryza sativa Japonica Group ) [TaxId: 39947 ], SCOPe (2.08)
C [auth E]d1wdde2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Oryza sativa Japonica Group ) [TaxId: 39947 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth S]SCOP2 FamilyRuBisCO, small subunit 8031050 4001455 SCOP2 (2022-06-29)
B [auth S]SCOP2 SuperfamilyRuBisCO, small subunit 8043428 3001622 SCOP2 (2022-06-29)
D [auth W]SCOP2B SuperfamilyRuBisCO, small subunit 8043428 3001622 SCOP2B (2022-06-29)
ASCOP2 FamilyRuBisCo, large subunit, C-terminal domain 8031043 4003287 SCOP2 (2022-06-29)
ASCOP2 FamilyRibulose 1, 5-bisphosphate carboxylase-oxygenase 8031045 4001311 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRuBisCo, C-terminal domain 8043421 3000552 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8043423 3001258 SCOP2 (2022-06-29)
C [auth E]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8043423 3001258 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8043421 3000552 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth S]RuBisCO_smalle1wddS1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
D [auth W]RuBisCO_smalle1wddW1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
ARuBisCO_large_Ne1wddA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee1wddA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
C [auth E]RuBisCO_large_Ne1wddE1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
C [auth E]RuBisCO_largee1wddE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth S],
D [auth W]
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain
A,
C [auth E]
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
A,
C [auth E]
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth S],
D [auth W]
Ribulose bisphosphate carboxylase small chain C
A,
C [auth E]
Ribulose bisphosphate carboxylase large chain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth S],
D [auth W]
MME Parent Component: MET

RESIDAA0064

PSI-MOD :  N-methyl-L-methionine MOD:00073
A,
C [auth E]
KCX Parent Component: LYS

RESIDAA0064