1ZLQ
Crystallographic and spectroscopic evidence for high affinity binding of Fe EDTA (H2O)- to the periplasmic nickel transporter NikA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1zlqa1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | Phosphate binding protein-like | Nickel-binding periplasmic protein NikA | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1zlqb_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | Phosphate binding protein-like | Nickel-binding periplasmic protein NikA | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Phosphate binding protein-like | 8023480 | 4000229 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Type 2 solute binding protein-like | 8035860 | 3000083 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8035860 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SBP_bac_5_1st | e1zlqA2 | A: a+b two layers | X: Alpha-beta plaits | H: Oligo-peptide binding protein (OPPA) insertion domain (From Topology) | T: Oligo-peptide binding protein (OPPA) insertion domain | F: SBP_bac_5_1st | ECOD (1.6) |
A | SBP_bac_5_3rd | e1zlqA3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_3rd | ECOD (1.6) |
A | SBP_bac_5_2nd | e1zlqA4 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_2nd | ECOD (1.6) |
B | SBP_bac_5_1st | e1zlqB1 | A: a+b two layers | X: Alpha-beta plaits | H: Oligo-peptide binding protein (OPPA) insertion domain (From Topology) | T: Oligo-peptide binding protein (OPPA) insertion domain | F: SBP_bac_5_1st | ECOD (1.6) |
B | SBP_bac_5_3rd | e1zlqB3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_3rd | ECOD (1.6) |
B | SBP_bac_5_2nd | e1zlqB2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
A | 3.10.105.10 | Alpha Beta | Roll | Dipeptide-binding Protein | domain 3 | CATH (4.3.0) |
B | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
B | 3.10.105.10 | Alpha Beta | Roll | Dipeptide-binding Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00496 | Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5) | Bacterial extracellular solute-binding proteins, family 5 Middle | The borders of this family are based on the PDBSum definitions of the domain edges for Swiss:P06202. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011980 | Metal-staphylopine-binding protein CntA-like | Family | |
IPR030678 | Peptide/nickel binding protein, MppA-type | Family | |
IPR023765 | Solute-binding protein family 5, conserved site | Conserved Site | |
IPR000914 | Solute-binding protein family 5 domain | Domain | |
IPR039424 | Solute-binding protein family 5 | Family |