Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2pwma_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)
Bd2pwmb_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)
Cd2pwmc_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)
Dd2pwmd_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)
Ed2pwme_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)
Fd2pwmf_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)
Gd2pwmg_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)
Hd2pwmh_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGag_p24_Ne2pwmA1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
BGag_p24_Ne2pwmB1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
CGag_p24_Ne2pwmC1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
DGag_p24_Ne2pwmD1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
EGag_p24_Ne2pwmE1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
FGag_p24_Ne2pwmF1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
GGag_p24_Ne2pwmG1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
HGag_p24_Ne2pwmH1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Gag-Pol polyprotein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR036397Ribonuclease H superfamilyHomologous Superfamily
A, B, C, D, E
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A, B, C, D, E
IPR001995Peptidase A2A, retrovirus, catalyticDomain
A, B, C, D, E
IPR001878Zinc finger, CCHC-typeDomain
A, B, C, D, E
IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
A, B, C, D, E
IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
A, B, C, D, E
IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
A, B, C, D, E
IPR018061RetropepsinsDomain
A, B, C, D, E
IPR010661Reverse transcriptase thumbDomain
A, B, C, D, E
IPR002156Ribonuclease H domainDomain
A, B, C, D, E
IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
A, B, C, D, E
IPR003308Integrase, N-terminal zinc-binding domainDomain
A, B, C, D, E
IPR001584Integrase, catalytic coreDomain
A, B, C, D, E
IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
A, B, C, D, E
IPR010999Retroviral matrix proteinHomologous Superfamily
A, B, C, D, E
IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR001969Aspartic peptidase, active siteActive Site
A, B, C, D, E
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR017856Integrase-like, N-terminalHomologous Superfamily
A, B, C, D, E
IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
A, B, C, D, E
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A, B, C, D, E
IPR001037Integrase, C-terminal, retroviralDomain
A, B, C, D, E
IPR034170Retropepsin-like catalytic domainDomain
A, B, C, D, E
IPR000477Reverse transcriptase domainDomain
A, B, C, D, E
IPR010659Reverse transcriptase connectionDomain
A, B, C, D, E
IPR008916Retrovirus capsid, C-terminalHomologous Superfamily