Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyYjgF/L-PSP 8059828 4001510 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYjgF-like 8059829 3001733 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyYjgF-like 8059829 3001733 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyYjgF-like 8059829 3001733 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARibonuc_L-PSPe2uyjA1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: Ribonuc_L-PSPECOD (1.6)
BRibonuc_L-PSPe2uyjB1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: Ribonuc_L-PSPECOD (1.6)
CRibonuc_L-PSPe2uyjC1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: Ribonuc_L-PSPECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
B3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
C3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF01042Endoribonuclease L-PSP (Ribonuc_L-PSP)Endoribonuclease L-PSPEndoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. Yjg ...Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. YjgF (renamed RidA) family members are enamine/imine deaminases. They hydrolyze reactive intermediates released by PLP-dependent enzymes, including threonine dehydratase [5]. YjgF also prevents inhibition of transaminase B (IlvE) in Salmonella [4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
PROTEIN TDCF

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR019897RidA, conserved siteConserved Site
A, B, C
IPR006056RidA familyFamily
A, B, C
IPR035959RutC-like superfamilyHomologous Superfamily
A, B, C
IPR006175YjgF/YER057c/UK114 familyFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, C
OCS Parent Component: CYS

RESIDAA0556

PSI-MOD :  L-cysteic acid (L-cysteine sulfonic acid) MOD:00460