3DPJ
The crystal structure of a TetR transcription regulator from Silicibacter pomeroyi DSS
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | TetR C-terminal domain-like | 8090197 | 3000086 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Homeodomain-like | 8090196 | 3000001 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TetR C-terminal domain-like | 8090197 | 3000086 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Homeodomain-like | 8090196 | 3000001 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TetR C-terminal domain-like | 8090197 | 3000086 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Homeodomain-like | 8090196 | 3000001 | SCOP2B (2022-06-29) |
F | SCOP2 Family | Tetracyclin repressor-like | 8088734 | 4000333 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | TetR C-terminal domain-like | 8090197 | 3000086 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | Homeodomain-like | 8090196 | 3000001 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Homeodomain-like | 8090196 | 3000001 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TetR C-terminal domain-like | 8090197 | 3000086 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Homeodomain-like | 8090196 | 3000001 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TetR C-terminal domain-like | 8090197 | 3000086 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | TetR C-terminal domain-like | 8090197 | 3000086 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Homeodomain-like | 8090196 | 3000001 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | TetR C-terminal domain-like | 8090197 | 3000086 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Homeodomain-like | 8090196 | 3000001 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | TetR_N | e3dpjB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
B | TetR_C_13 | e3dpjB2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_13 | ECOD (1.6) |
C | TetR_N | e3dpjC1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
C | TetR_C_13 | e3dpjC2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_13 | ECOD (1.6) |
D | TetR_N | e3dpjD1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
D | TetR_C_13 | e3dpjD2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_13 | ECOD (1.6) |
F | TetR_N | e3dpjF1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
F | TetR_C_13 | e3dpjF2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_13 | ECOD (1.6) |
A | TetR_N | e3dpjA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
A | TetR_C_13 | e3dpjA2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_13 | ECOD (1.6) |
E | TetR_N | e3dpjE1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
E | TetR_C_13 | e3dpjE2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_13 | ECOD (1.6) |
G | TetR_N | e3dpjG1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
G | TetR_C_13 | e3dpjG2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_13 | ECOD (1.6) |
H | TetR_N | e3dpjH1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
H | TetR_C_13 | e3dpjH2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_13 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
C | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
D | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
F | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
A | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
E | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
G | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
H | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21993 | Transcriptional regulator LmrA/YxaF-like, C-terminal domain (TetR_C_13_2) | Transcriptional regulator LmrA/YxaF-like, C-terminal domain | This entry represents the C-terminal domain found in a group of TetR transcription regulators, including YxaF (also known as T1414) [1] and LmrA from Bacillus subtilis, which are paralogous to each other [2]. LmrA and YxaF are repressors that bind sp ... | Domain | |
PF00440 | Bacterial regulatory proteins, tetR family (TetR_N) | Bacterial regulatory proteins, tetR family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Transcription regulator, TetR family | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR054156 | Transcriptional regulator LmrA/YxaF-like, C-terminal domain | Domain | |
IPR001647 | DNA-binding HTH domain, TetR-type | Domain | |
IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily | Homologous Superfamily |