3SY9

Crystal structure of Pseudomonas aeruginosa OccD2 (OpdC)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3sy9a_	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccD-like (OprD-like)	OpdC porin (OccD2)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
B	d3sy9b_	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccD-like (OprD-like)	OpdC porin (OccD2)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
C	d3sy9c_	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccD-like (OprD-like)	OpdC porin (OccD2)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
D	d3sy9d_	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccD-like (OprD-like)	OpdC porin (OccD2)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	OprD	e3sy9A2	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: OprD	ECOD (1.6)
B	OprD	e3sy9B2	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: OprD	ECOD (1.6)
C	OprD	e3sy9C1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: OprD	ECOD (1.6)
D	OprD	e3sy9D1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: OprD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)
B	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)
C	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)
D	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03573	outer membrane porin, OprD family (OprD)	outer membrane porin, OprD family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Histidine porin OpdC	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR023614	Porin domain superfamily	Homologous Superfamily
A, B, C, D	IPR005318	Outer membrane porin, bacterial	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Transmembrane	Beta-barrel transmembrane	OprD/AlgE superfamily (n=18,S=22)	Outer membrane porin (Opr)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Outer Membrane Carboxylate Channels (Occ)	OccD2 (OpdC) basic amino acid uptake channel

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.