3WKX

Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum arabinose complex form

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Beta-L-arabinofuranosidase-like	8050271	4006821	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Six-hairpin glycosidases	8051872	3000970	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YicI C-terminal domain-like	8051873	3000267	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	GH127 C-terminal domain-like	8051874	3002042	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	COG3533	e3wkxA2	A: beta barrels	X: Glycoside hydrolase family 127 C-terminal domain (From Topology)	H: Glycoside hydrolase family 127 C-terminal domain (From Topology)	T: Glycoside hydrolase family 127 C-terminal domain	F: COG3533	ECOD (1.6)
A	Glyco_hydro_127_2nd_1	e3wkxA3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related (From Topology)	T: Glycoside hydrolase family 127 middle domain-related	F: Glyco_hydro_127_2nd_1	ECOD (1.6)
A	Glyco_hydro_127_1st	e3wkxA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_127_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07944	Beta-L-arabinofuranosidase, GH127 catalytic domain (Beta-AFase-like_GH127_cat)	Beta-L-arabinofuranosidase, GH127 catalytic domain	-	Repeat
A	PF20736	Beta-L-arabinofuranosidase, GH127 middle domain (Glyco_hydro127M)	Beta-L-arabinofuranosidase, GH127 middle domain	This entry represents the first of two beta sandwich domains found in the beta-L-arabinofuranosidase enzyme, EC:3.2.1.185 [1]. This domain shows a similarity to C-terminal domains of GH44, GH27, and GH39 enzymes [1].	Domain
A	PF20737	Glycoside hydrolase family 127 C-terminal domain (Glyco_hydro127C)	Glycoside hydrolase family 127 C-terminal domain	This entry represents the second beta sandwich domain found in enzymes belonging to the glycosyl hydrolase 127 family [1]. The beta-sandwich domain is somewhat similar to the N-terminal domain of ErbB4 kinase and is involved in formation of a dimer, ...	This entry represents the second beta sandwich domain found in enzymes belonging to the glycosyl hydrolase 127 family [1]. The beta-sandwich domain is somewhat similar to the N-terminal domain of ErbB4 kinase and is involved in formation of a dimer, which is created by a crystallographic 2-fold axis [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Non-reducing end beta-L-arabinofuranosidase	cation binding ion binding binding metal ion binding small molecule binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds beta-L-arabinofuranosidase activity hydrolase activity catalytic activity	carbohydrate metabolic process polysaccharide metabolic process catabolic process polysaccharide catabolic process carbohydrate catabolic process metabolic process primary metabolic process macromolecule metabolic process macromolecule catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A	IPR049174	Non-reducing end beta-L-arabinofuranosidase-like	Family
A	IPR049046	Non-reducing end beta-L-arabinofuranosidase-like, GH127 middle domain	Domain
A	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A	IPR049049	Non-reducing end beta-L-arabinofuranosidase-like, GH127 C-terminal domain	Domain
A	IPR012878	Non-reducing end beta-L-arabinofuranosidase-like, GH127 catalytic domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.