Crystal structure of ligand-bound NaD1
External Resource: Annotation
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
A | d4cqka_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
B | d4cqkb_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
C | d4cqkc_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
D | d4cqkd_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
E | d4cqke_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
F | d4cqkf_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
G | d4cqkg_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
H | d4cqkh_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
I | d4cqki_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
J | d4cqkj_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
K | d4cqkk_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
L | d4cqkl_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
M | d4cqkm_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
N | d4cqkn_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | Floral defensin 1 | (Nicotiana alata ) [TaxId: 4087 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
I | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
J | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
K | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
L | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
M | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
N | SCOP2B Superfamily | Scorpion toxin-like | 8078335 | 3000309 | SCOP2B (2021-05-27) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF00304 | e4cqkA1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
B | PF00304 | e4cqkB1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
C | PF00304 | e4cqkC1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
D | PF00304 | e4cqkD1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
E | PF00304 | e4cqkE1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
F | PF00304 | e4cqkF1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
G | PF00304 | e4cqkG1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
H | PF00304 | e4cqkH1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
I | PF00304 | e4cqkI1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
J | PF00304 | e4cqkJ1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
K | PF00304 | e4cqkK1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
L | PF00304 | e4cqkL1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
M | PF00304 | e4cqkM1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
N | PF00304 | e4cqkN1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: PF00304 | ECOD (1.6) |
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|
A | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
B | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
C | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
D | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
E | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
F | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
G | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
H | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
I | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
J | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
K | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
L | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
M | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
N | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
Chains | Accession | Name | Description | Comments | Source |
---|
A, B, C, D, E, F, G, H, I, J, K, L, M, N | PF00304 | Gamma-thionin family (Gamma-thionin) | Gamma-thionin family | - | Domain |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
A, B, C, D, E, F, G, H, I, J, K, L, M, N | FLOWER-SPECIFIC DEFENSIN | - | | |
Chains | Accession | Name | Type |
---|
A, B, C, D, E, F, G, H, I, J, K, L, M, N | IPR036574 | Knottin, scorpion toxin-like superfamily | Homologous Superfamily |
A, B, C, D, E, F, G, H, I, J, K, L, M, N | IPR008176 | Defensin, plant | Family |
A, B, C, D, E, F, G, H, I, J, K, L, M, N | IPR003614 | Knottin, scorpion toxin-like | Domain |
Chains | External Link | Type | Class | Superfamily | Family |
---|
A, B, C, D, E, F, G, H, I, J, K, L, M, N | OPM | Monotopic/peripheral | Alpha + Beta monotopic/peripheral | Scorpion toxin-like knottin | Plant defensins |