4CZD | pdb_00004czd

Sirohaem decarboxylase AhbA/B - an enzyme with structural homology to the Lrp/AsnC transcription factor family that is part of the alternative haem biosynthesis pathway.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HTH_AsnC-type_1	e4czdA2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: HTH_AsnC-type_1	ECOD (1.6)
A	AsnC_trans_reg_like	e4czdA1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: AsnC_trans_reg_like	ECOD (1.6)
C	HTH_AsnC-type_1	e4czdC1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: HTH_AsnC-type_1	ECOD (1.6)
C	AsnC_trans_reg_like	e4czdC2	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: AsnC_trans_reg_like	ECOD (1.6)
B	HTH_AsnC-type_1	e4czdB2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: HTH_AsnC-type_1	ECOD (1.6)
B	Lrp	e4czdB1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Lrp	ECOD (1.6)
D	HTH_AsnC-type_1	e4czdD1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: HTH_AsnC-type_1	ECOD (1.6)
D	Lrp	e4czdD2	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Lrp	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF17805	AsnC-like ligand binding domain (AsnC_trans_reg2)	AsnC-like ligand binding domain	This entry contains an AsnC-like ligand binding domain.	Domain
A, C	PF22451	Siroheme decarboxylase NirDL-like HTH domain (NirdL-like_HTH)	Siroheme decarboxylase NirDL-like HTH domain	This entry represents the HTH domains found in siroheme decarboxylase NirdL from Hydrogenobacter thermophilus and related sequences [5]. NirdL is involved in heme d1 biosynthesis. It catalyses the decarboxylation of siroheme into didecarboxysiroheme. ...	This entry represents the HTH domains found in siroheme decarboxylase NirdL from Hydrogenobacter thermophilus and related sequences [5]. NirdL is involved in heme d1 biosynthesis. It catalyses the decarboxylation of siroheme into didecarboxysiroheme.	Domain
B, D	PF17805	AsnC-like ligand binding domain (AsnC_trans_reg2)	AsnC-like ligand binding domain	This entry contains an AsnC-like ligand binding domain.	Domain
B, D	PF22451	Siroheme decarboxylase NirDL-like HTH domain (NirdL-like_HTH)	Siroheme decarboxylase NirDL-like HTH domain	This entry represents the HTH domains found in siroheme decarboxylase NirdL from Hydrogenobacter thermophilus and related sequences [5]. NirdL is involved in heme d1 biosynthesis. It catalyses the decarboxylation of siroheme into didecarboxysiroheme. ...	This entry represents the HTH domains found in siroheme decarboxylase NirdL from Hydrogenobacter thermophilus and related sequences [5]. NirdL is involved in heme d1 biosynthesis. It catalyses the decarboxylation of siroheme into didecarboxysiroheme.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	PUTATIVE TRANSCRIPTIONAL REGULATOR, ASNC FAMILY	lyase activity catalytic activity	heme metabolic process pigment metabolic process porphyrin-containing compound biosynthetic process tetrapyrrole metabolic process heme biosynthetic process pigment biosynthetic process tetrapyrrole biosynthetic process biosynthetic process metabolic process cellular process porphyrin-containing compound metabolic process	-
B, D	PUTATIVE TRANSCRIPTIONAL REGULATOR, ASNC FAMILY	lyase activity catalytic activity	heme metabolic process pigment metabolic process porphyrin-containing compound biosynthetic process tetrapyrrole metabolic process heme biosynthetic process pigment biosynthetic process tetrapyrrole biosynthetic process biosynthetic process metabolic process cellular process porphyrin-containing compound metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR053953	Siroheme decarboxylase NirL-like, HTH domain	Domain
A, C	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, C	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, C	IPR040523	Siroheme decarboxylase , AsnC-like ligand binding domain	Domain
A, C	IPR050684	HTH-type Transcriptional Regulators and Siroheme Decarboxylases	Family
B, D	IPR053953	Siroheme decarboxylase NirL-like, HTH domain	Domain
B, D	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
B, D	IPR040523	Siroheme decarboxylase , AsnC-like ligand binding domain	Domain
B, D	IPR050684	HTH-type Transcriptional Regulators and Siroheme Decarboxylases	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.