4FNQ
Crystal structure of GH36 alpha-galactosidase AgaB from Geobacillus stearothermophilus
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | GH36 C-terminal domain-like | 8046285 | 4004999 | SCOP2 (2022-06-29) |
A | SCOP2 Family | GH36 N-terminal domain-like | 8046288 | 4005000 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Melibase catalytic domain-like | 8049801 | 4006645 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glycosyl hydrolase domain-like | 8093331 | 3001528 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Galactose mutarotase-like | 8093332 | 3000035 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | (Trans)glycosidases | 8093333 | 3000313 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Glyco_hydro_36C | e4fnqA2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_36C | ECOD (1.6) |
A | Glyco_hydro_36N | e4fnqA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Glyco_hydro_36N | ECOD (1.6) |
A | Melibiase | e4fnqA4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Melibiase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.70.98.60 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02065 | Melibiase (Melibiase) | Melibiase | - | Family | |
PF16875 | Glycosyl hydrolase family 36 N-terminal domain (Glyco_hydro_36N) | Glycosyl hydrolase family 36 N-terminal domain | This domain is found at the N-terminus of many family 36 glycoside hydrolases. It has a beta-supersandwich fold [1]. | Domain | |
PF16874 | Glycosyl hydrolase family 36 C-terminal domain (Glyco_hydro_36C) | Glycosyl hydrolase family 36 C-terminal domain | This domain is found at the C-terminus of many family 36 glycoside hydrolases. It has a beta-sandwich structure with a Greek key motif [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Alpha-galactosidase AgaB | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000111 | Glycoside hydrolase family 27/36, conserved site | Conserved Site | |
IPR038417 | Alpha-galactosidase, N-terminal domain superfamily | Homologous Superfamily | |
IPR031704 | Glycosyl hydrolase family 36, N-terminal | Domain | |
IPR031705 | Glycosyl hydrolase family 36, C-terminal | Domain | |
IPR050985 | Alpha-glycosidase and related enzymes | Family | |
IPR002252 | Glycoside hydrolase family 36 | Family | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily |