4N3E

Crystal structure of Hyp-1, a St John's wort PR-10 protein, in complex with 8-anilino-1-naphthalene sulfonate (ANS)


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Id4n3ei_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Kd4n3ek_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Pd4n3ep_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Rd4n3er_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Td4n3et_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Vd4n3ev_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Xd4n3ex_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Ad4n3ea_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Bd4n3eb_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Cd4n3ec_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Dd4n3ed_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Ed4n3ee_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Fd4n3ef_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Gd4n3eg_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Hd4n3eh_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Jd4n3ej_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Ld4n3el_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Md4n3em_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Nd4n3en_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Od4n3eo_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Qd4n3eq_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Sd4n3es_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Ud4n3eu_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Wd4n3ew_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Yd4n3ey_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)
Zd4n3ez_ Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches St. John's wort (Hypericum perforatum ) [TaxId: 65561 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
USCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyBet v1-like 8063077 3000738 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IPolyketide_cyc2e4n3eI1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
KPolyketide_cyc2e4n3eK1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
PPolyketide_cyc2e4n3eP1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
RPolyketide_cyc2e4n3eR1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
TPolyketide_cyc2e4n3eT1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
VPolyketide_cyc2e4n3eV1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
XPolyketide_cyc2e4n3eX1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
APolyketide_cyc2e4n3eA1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
AA [auth a]Polyketide_cyc2e4n3ea1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
BPolyketide_cyc2e4n3eB1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
BA [auth b]Polyketide_cyc2e4n3eb1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
CPolyketide_cyc2e4n3eC1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
DPolyketide_cyc2e4n3eD1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
EPolyketide_cyc2e4n3eE1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
FPolyketide_cyc2e4n3eF1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
GPolyketide_cyc2e4n3eG1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
HPolyketide_cyc2e4n3eH1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
JPolyketide_cyc2e4n3eJ1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
LPolyketide_cyc2e4n3eL1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
MPolyketide_cyc2e4n3eM1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
NPolyketide_cyc2e4n3eN1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
OPolyketide_cyc2e4n3eO1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
QPolyketide_cyc2e4n3eQ1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
SPolyketide_cyc2e4n3eS1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
UPolyketide_cyc2e4n3eU1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
WPolyketide_cyc2e4n3eW1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
YPolyketide_cyc2e4n3eY1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)
ZPolyketide_cyc2e4n3eZ1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: Polyketide_cyc2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
K3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
P3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
R3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
T3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
V3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
X3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
A3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
AA [auth a]3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
B3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
BA [auth b]3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
C3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
D3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
E3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
F3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
G3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
H3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
J3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
L3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
M3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
N3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
O3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
Q3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
S3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
U3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
W3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
Y3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)
Z3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00407Pathogenesis-related protein Bet v 1 family (Bet_v_1)Pathogenesis-related protein Bet v 1 familyThis family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent ye ...This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10 [2]: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1 (Swiss:Q8H1L1), an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones [3]. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine [4]. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber [4]. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens (Swiss:Q9AXI3).
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Phenolic oxidative coupling protein