4NJU
Crystal structure of multidrug-resistant clinical isolate A02 HIV-1 protease in complex with tipranavir
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d4njuc_ | All beta proteins | Acid proteases | Acid proteases | Retroviral protease (retropepsin) | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
A | d4njua_ | All beta proteins | Acid proteases | Acid proteases | Retroviral protease (retropepsin) | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
B | d4njub_ | All beta proteins | Acid proteases | Acid proteases | Retroviral protease (retropepsin) | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
D | d4njud_ | All beta proteins | Acid proteases | Acid proteases | Retroviral protease (retropepsin) | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Acid proteases | 8072165 | 3001059 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Acid proteases | 8072165 | 3001059 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Acid proteases | 8072165 | 3001059 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Acid proteases | 8072165 | 3001059 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | RVP | e4njuC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (1.6) |
A | RVP | e4njuA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (1.6) |
B | RVP | e4njuB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (1.6) |
D | RVP | e4njuD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: RVP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
A | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
B | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
D | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00077 | Retroviral aspartyl protease (RVP) | Retroviral aspartyl protease | Single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Protease | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR034170 | Retropepsin-like catalytic domain | Domain | |
IPR021109 | Aspartic peptidase domain superfamily | Homologous Superfamily | |
IPR001969 | Aspartic peptidase, active site | Active Site | |
IPR001995 | Peptidase A2A, retrovirus, catalytic | Domain | |
IPR018061 | Retropepsins | Domain |